Protein Model on 7gko assembly_id=1
(TEMPLATE: 
7gko
assembly_id:1
)Protein Model on 7gko assembly_id=1
(TEMPLATE: 7gko
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [302 aa] | 3C-like proteinase :R1AB_SARS2 | 1S 2G 4R 5K 6M 7A 8F 9P 10S 11G 14E 115L 122P 123S 124G 125V 126Y 127Q 128C 137K 138G 139S 140F 141L 166E 170G 172H 280T 283G 285A 286L 290E 299Q 301S 302G 303V 304T 305F (identity: 100.0 %/100.0 %) | |
| 2 | b | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [305 aa] | 3C-like proteinase :R1AB_SARS2 | |
| 3 | c | C 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 118Y 123S (identity: 100.0 %/100.0 %) | |
| 4 | d | D 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 5 | e | E 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 123S (identity: 100.0 %/100.0 %) | |
| 6 | f | F 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 7 | g | G 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 8 | h | H 1 (A) | non-polymer(CL) | CHLORIDE ION | ||
| 9 | i | I 1 (A) | non-polymer(QYN) | (4S)-6-chloro-2-(1H-imidazole-2-sulfonyl)-N-(isoquinolin-4-yl)-1,2,3,4-tetrahydroisoquinoline-4-carboxamide | ||
| 10 | j | J 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 11 | k | K 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 6M 8F 127Q 295D 298R (identity: 100.0 %/100.0 %) | |
| 12 | l | L 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 2G 3F 4R 282L 283G (identity: 100.0 %/100.0 %) | |
| 13 | m | M 1 (B) | non-polymer(QYN) | (4S)-6-chloro-2-(1H-imidazole-2-sulfonyl)-N-(isoquinolin-4-yl)-1,2,3,4-tetrahydroisoquinoline-4-carboxamide | 41H 49M 140F 141L 142N 144S 145C 163H 164H 165M 166E 187D 188R 189Q (identity: 100.0 %/100.0 %) | |
| 14 | n | N 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 271L 275G 285A 286L 287L (identity: 100.0 %/100.0 %) | |
| 15 | o | O 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 5K 7A 125V 126Y 127Q (identity: 100.0 %/100.0 %) | |
| 16 | p | P 1 (B) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 12K 97K 99P (identity: 100.0 %/100.0 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:7gko_B_1 identity=100.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:****************************************************************************************************:
7gko_B_1 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG TTTTTS HHHHHHH GGGEEEEETTEEE EEEEEEETTEEEEEESS TT E:
ExpBur :eebeeeebebeebeebbbbbbbeeeebbbbbbeebbbbbebbbbeeeeeeeeebeebbeeeeeeebebebeeeebebeeeeeeebbbebebeeebeeebe:
Contact :aalaaaaaaaap a m m p p
Contact : l lokok
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:****************************************************************************************************:
7gko_B_1 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSSS SSSS B :
ExpBur :eeeeebeebebbbbbbbeebeeeeeebbbbbbbebbeeebeebbbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeebeb:
Contact : a c aaaaaaa aaaaam mm mmma a a mmm
Contact : c ook mm m
Contact : e o
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:****************************************************************************************************:
7gko_B_1 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHHHTTB HHHHHHTHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS S HHHHHHHT:
ExpBur :bbbbbbbbbbbbeeeeeebeeeeebeeeebeebbeeeebeebeeeebeebeebbeebebebeebbbbbbebbeeebeeeebeeeeebebbbbbebbeeee:
Contact : n n a la aan a k ka
Contact : l nn
queryA 301:SGVTF: 305
:*****:
7gko_B_1 301:SGVTF: 305
SecStr :TT :
ExpBur :eeeee:
Contact :aaaaa
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