Protein Model on 5nfy assembly_id=4
(TEMPLATE: 
5nfy
assembly_id:4
)Protein Model on 5nfy assembly_id=4
(TEMPLATE: 5nfy
assembly_id:4
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | D 1 (D) | polymer(polypeptide(L)) [514 aa] | Polyprotein 1ab :Q1T6X8_CVHSA | |
| 2 | b | G 1 (O) | polymer(polypeptide(L)) [133 aa] | Polyprotein 1ab :Q1T6X8_CVHSA | 3N 4V 5T 7L 8F 9K 10D 19H 20P 21T 22Q 23A 24P 25T 26H 27L 29V 38L 39C 40V 41D 47K 51Y 55I 60F 61K 62M 64Y 65Q 66V 69Y 95H 104N 124Y 126D 127T 128P(E) 129N 130N 131T 192L 195M 196K 199V 200K 201I 217F 224Y 237Y (identity: 98.0 %/92.8 %) | |
| 3 | c | U 1 (D) | non-polymer(ZN) | ZINC ION | 207C 208C 209L 210C 226C 229H (identity: 100.0 %/92.8 %) | |
| 4 | d | V 1 (D) | non-polymer(ZN) | ZINC ION | 257H 261C 264H 279C (identity: 100.0 %/92.8 %) | |
| 5 | e | W 1 (D) | non-polymer(ZN) | ZINC ION | 452C 475T 477C 484C 487H (identity: 100.0 %/92.8 %) | |
| 6 | f | BA 1 (O) | non-polymer(ZN) | ZINC ION | ||
| 7 | g | CA 1 (O) | non-polymer(ZN) | ZINC ION | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5nfy_D_1 identity=92.8% |
queryA 1:AENVTGLFKDCSKVITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATREA: 100
:************* **************** ******************************************************************* *:
5nfy_D_1 8:AENVTGLFKDCSKIITGLHPTQAPTHLSVDIKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDA: 107
SecStr : STT B B S B TTT SSGGGB GGGEETTEE TTS S EEE TT SB HHHHHHTGGGEEEEEEEEEEE SSB:
ExpBur :eeeeeeeeeebbeeeeebbeebbeeeebbbeebeeeeeeeeeeeeeeeeebebbbbbeebeeeeeeeeebebebeeeebeeebbbbbbbbbbbbebeeeb:
Contact : bbb bbbb bbbbbbbbb b bbbb b b b bbb bbb b b
queryA 101:VGTNLPLQLGFSTGVNLVAVPTGYVDTPNNTDFSRVSAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGFELTSMKYFVK: 200
:*************************** *** * ** ************************************** ************************:
5nfy_D_1 108:VGTNLPLQLGFSTGVNLVAVPTGYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVVFVLWAHGFELTSMKYFVK: 207
SecStr : S EEEEEEEESSS EEE EEEEE SSSEEEEE EE SSGGGGGGTTHHHH HHHHHHHHHHHHHHHHTTT SS EEEESSTHHHHHHHTTTB :
ExpBur :eebebbbbbbbeeeeebbbbbbbbbbbeeeeeeeebeeeebeeeeeeebeebeeebeebeebbeebbebbbeebeebeebbbbbbbeeebbbbbbebbbe:
Contact : b b bbbbbb b bb bb
queryA 201:IGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWTIEYPIIG: 300
:*********** ******* ******* ** *************************** ******************************** ******:
5nfy_D_1 208:IGPERTCCLCDKRATCFSTSSDTYACWNHSVGFDYVYNPFMIDVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIG: 307
SecStr : S B TTSSSB EEETTTTEEE TTT S EE S EEEEGGGGT SS HHHHHHTT SSS S HHHHHHHHHHHHHHHHHTSS TT S:
ExpBur :ebeeeebeeeeebbbbbbeeeeebbbbeebeebbbbbbbbbbbbeebeeeeebeebbeeebeeeeeeeebbbbbebbbbbbbbbbbeeeeeeebebeeee:
Contact :b cccc b b c c b d d d d
queryA 301:DELKINAACRKVQHMVVKAALLADKFPVLHDIGNPKAIKCVPQADVEWKFYDAQPCSDKAYKIEELFYSYATHSDKFTDGVCLFWNCNVDRYPANSIVCR: 400
:*** * *********** ************************* ************************** * ********************* ****:
5nfy_D_1 308:DELRVNSACRKVQHMVVKSALLADKFPVLHDIGNPKAIKCVPQAEVEWKFYDAQPCSDKAYKIEELFYSYAIHHDKFTDGVCLFWNCNVDRYPANAIVCR: 407
SecStr :S HHHHHHHHHHHHHHHHHHHHHH SEEEEES SS SSTT SSEEEEEESS STT TTEEE HHHHTTTT SSEEEEES S SSEEEEE:
ExpBur :ebeebeebbeebeebbbebbbebeebebbbbbebeebeebbeeeebebebbbeeeeeeeeeebeebebbeeebeeebeebbbbbbebebeebbebbbbbb:
queryA 401:FDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFVNLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRLYLDAYNM: 500
:************************************ **************** **************************** *******:
5nfy_D_1 408:FDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFTNLKQLPFFYYSDSPCEXXXXXXXXXXXYVPLKSATCITRCNLGGAVCRHHANEYRQYLDAYNM: 507
SecStr :E TT SSEEE SSS EEE SSS EEE GGGGTTEEE EEE S ----------- TTEEESS SSS HHHHHHHHHHHHHHHH:
ExpBur :bbbeeeeebbbebbeebbbbbbebbebbeebeeebbeebeebebbbbbeeeee-----------eeeeeeeebbbeeeeeeeebeebbeebeebeebbeb:
Contact : e e e e e
queryA 501:MISAGFSLWVYKQFDTYNLWNTFTR: 525
:********* ***************:
5nfy_D_1 508:MISAGFSLWIYKQFDTYNLWNTFTR: 532
SecStr :HHHTTEEEEEETT THHHHTTS :
ExpBur :beebbbbbbbbeebeeeebeeebee:
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