Protein Model on 5jg8 assembly_id=1 focusing on 527-th site
(TEMPLATE: 
5jg8
assembly_id:1
)Protein Model on 5jg8 assembly_id=1 focusing on 527-th site
(TEMPLATE: 5jg8
assembly_id:1
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| FOCUSED SITES | template(5jg8_B auth_asym_id:B) | ||||||
| SiteNum | AA | label_ seq_id |
auth_ seq_id |
AA | Sec | Exp/Bur | RelAcc |
| 527 | N | 482 | 525 | N | T | e | 24.2 |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [529 aa] | Sphingomyelin phosphodiesterase :ASM_HUMAN | 84F 86W 89L 92P 93I 94C 95K 96G 97L 98F 100A 101I 114V 117V 118A 121L 136I 140F 144M 145V 148W 152V 153L 161L 162L (identity: 100.0 %/100.0 %) | |
| 2 | b | A(ASM_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [530 aa] | Sphingomyelin phosphodiesterase :ASM_HUMAN | |
| 3 | c | C 1 (C) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | ||
| 4 | d | D 1 (D) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | ||
| 5 | e | E 1 (E) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose | ||
| 6 | f | F 1 (F) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 522N 524T 525Q 536Q 574F 579G (identity: 100.0 %/100.0 %) | |
| 7 | g | G 1 (G) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 139L 289Q 290T 291R 337N (identity: 100.0 %/100.0 %) | |
| 8 | h | H 1 (H) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 171D 397N (identity: 100.0 %/100.0 %) | |
| 9 | i | I 1 (I) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 373P 374Y 505N (identity: 100.0 %/100.0 %) | |
| 10 | j | J 1 (A) | non-polymer(ZN) | ZINC ION | ||
| 11 | k | K 1 (A) | non-polymer(ZN) | ZINC ION | ||
| 12 | l | L 1 (A) | non-polymer(ACT) | ACETATE ION | ||
| 13 | m | M 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 127I (identity: 100.0 %/100.0 %) | |
| 14 | n | N 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | ||
| 15 | o | O 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | ||
| 16 | p | P 1 (B) | non-polymer(ZN) | ZINC ION | 208D 210H 280D 461H (identity: 100.0 %/100.0 %) | |
| 17 | q | Q 1 (B) | non-polymer(ZN) | ZINC ION | 208D 280D 320N 427H 459H (identity: 100.0 %/100.0 %) | |
| 18 | r | R 1 (B) | non-polymer(ACT) | ACETATE ION | 208D 210H 280D 284H 320N 321H 427H 459H 461H (identity: 100.0 %/100.0 %) | |
| 19 | s | S 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 84F 88N (identity: 100.0 %/100.0 %) | |
| 20 | t | T 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 176W 177N (identity: 100.0 %/100.0 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:5jg8_B_1 identity=100.0% |
queryA 84:FGWGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTV: 183
:****************************************************************************************************:
5jg8_B_1 39:FGWGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTV: 138
SecStr : GGGTHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH S HHHHHHHHHHHHHHHHHHHHHTTSSTTTHHHHHTBTTB TT SS:
ExpBur :eeeeeeeeeebeeebeeebeebeeeeebeeebeeebeeeeeeeebeeebbeeebeebbebebebebebbeeebbbbbeeebeebbeeebeeebebeeeee:
Contact :a a sa aaaaaaa aa a aa a m a ga aa a aa aa h tt
Contact :s
queryA 184:PKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPA: 283
:****************************************************************************************************:
5jg8_B_1 139:PKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPA: 238
SecStr : TT EEEEEEE B S B TTS SS SSSS SBTTS TT TT SSS B HHHHHHHHHTTSSS SEEEE B :
ExpBur :eeeeeeeeeeeeeeeeebbbbbbbbbbbbeebeeebbbebeeebbbbeebeeeeeeeeebbebbbbeebbbbeebbebbbeebeeebebebbbbbbbbbb:
Contact : p p p
Contact : q r q
Contact : r r
queryA 284:HDVWHQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLN: 383
:****************************************************************************************************:
5jg8_B_1 239:HDVWHQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLN: 338
SecStr :S SS HHHHHHHHHHHHHHHHHHHTTS EEE SSSSSSTT TTS SSSSSHHHHHHTTTSSTTTS HHHHHHHHHTS EEE SSTTEEEEE :
ExpBur :bbbbebeeeebeebbeebbebbeeebeeeebbbbbbbbbbbbbbbbbbeebeeeebbebbbebbbebbeebbeeebbebbeebbbbbbebbeebbbbbbb:
Contact :r ggg qr g ii
Contact : r
queryA 384:MNFCSRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFL: 483
:****************************************************************************************************:
5jg8_B_1 339:MNFCSRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFL: 438
SecStr :GGGG SS GGGGT SSGGGHHHHHHHHHHHHHHHT EEEEEESS TTSS SHHHHHHHHHHHHTTTTEEEEEEEEEES EEEEEE TTTS SEEEEEEE:
ExpBur :bbbbbeebbbbbbebebbeebbeebbebbbebbeeebebbbbbbbbbeebbebbbebbbebbbbbbebbbbbbbbbbbbbbbbbbbbeeebeebbbbbbb:
Contact : h q q p
Contact : r r r
queryA 484:APSATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPS: 583
:****************************************************************************************************:
5jg8_B_1 439:APSATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPS: 538
SecStr :EE SS TTT EEEEEEEE SSTT EEEEEEEEE HHHHTSTT EE BHHHHHT S SSHHHHHHHHHHHHH HHHHHHHHHHHTTT S:
ExpBur :bbbbbbeeebbbbbbbbbbbbeeeebbbbbbbbbbbbbebeebeeeeeeeebeeebebeeebebeebebebbbebbeebeeeeebbeebbebbbbeeeee:
Contact : i f ff f f f
queryA 584:EPCGTPCRLATLCAQLSARADSPALCRHLM: 613
:******************************:
5jg8_B_1 539:EPCGTPCRLATLCAQLSARADSPALCRHLM: 568
SecStr :S HHHHHHHHHHHH STT GGGGGGG :
ExpBur :eebeeeebeebbeebbbbbbebeebbeebe:
|
[help]