Protein Model on 5fc1 assembly_id=1
(TEMPLATE: 
5fc1
assembly_id:1
)Protein Model on 5fc1 assembly_id=1
(TEMPLATE: 5fc1
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(ASM_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [426 aa] | Acid sphingomyelinase-like phosphodiesterase 3a :ASM3A_MOUSE | |
| 2 | b | B 1 (B) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | 232G 234G(N) (identity: 50.0 %/35.1 %) | |
| 3 | c | C 1 (C) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 256L(Y) 300T(N) 303A(M) (identity: 0.0 %/35.1 %) | |
| 4 | d | D 1 (D) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 520I(Y) 522N 524T 525Q(E) 579G(S) (identity: 40.0 %/35.1 %) | |
| 5 | e | E 1 (E) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | 413Q(N) 417D(W) (identity: 0.0 %/35.1 %) | |
| 6 | f | F 1 (A) | non-polymer(ZN) | ZINC ION | 208D 210H 280D 461H (identity: 100.0 %/35.1 %) | |
| 7 | g | G 1 (A) | non-polymer(ZN) | ZINC ION | 280D 320N 427H 459H (identity: 100.0 %/35.1 %) | |
| 8 | h | H 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 534H(N) 536Q(T) (identity: 0.0 %/35.1 %) | |
| 9 | i | I 1 (A) | non-polymer(SO4) | SULFATE ION | 210H 280D 284H 320N 321H 459H 461H (identity: 100.0 %/35.1 %) | |
| 10 | j | J 1 (A) | non-polymer(GOL) | GLYCEROL | 204L(W) 266L(I) 267G(K) 272F(A) 309L(F) (identity: 0.0 %/35.1 %) | |
| 11 | k | K 1 (A) | non-polymer(GOL) | GLYCEROL | ||
| 12 | l | L 1 (A) | non-polymer(GOL) | GLYCEROL | 229C(S) 231R(K) 284H 490Y(V) 491I(K) 492G (identity: 33.3 %/35.1 %) | |
| 13 | m | M 1 (A) | non-polymer(GOL) | GLYCEROL | 290T(S) 291R(T) 292Q(G) (identity: 0.0 %/35.1 %) | |
| 14 | n | N 1 (A) | non-polymer(GOL) | GLYCEROL | 284H 459H 460T 461H 462V(R) 490Y(V) (identity: 66.7 %/35.1 %) | |
| 15 | o | O 1 (A) | non-polymer(GOL) | GLYCEROL | 239S 250S(V) 251K(L) 491I(K) 493L(V) 580H(Y) (identity: 16.7 %/35.1 %) | |
| 16 | p | P 1 (A) | non-polymer(GOL) | GLYCEROL | 560Y(Q) (identity: 0.0 %/35.1 %) | |
| 17 | q | Q 1 (A) | non-polymer(GOL) | GLYCEROL | 501Q 517E(V) 543E(Q) (identity: 33.3 %/35.1 %) | |
| 18 | r | R 1 (A) | non-polymer(GOL) | GLYCEROL | 362T 403G(N) 406Q(E) 407W (identity: 50.0 %/35.1 %) | |
| 19 | s | S 1 (A) | non-polymer(GOL) | GLYCEROL | 200V 201S(G) 373P(S) 374Y(N) 506Y 508G(P) (identity: 33.3 %/35.1 %) | |
| 20 | t | T 1 (A) | non-polymer(GOL) | GLYCEROL | 525Q(E) 529P(K) (identity: 0.0 %/35.1 %) | |
| 21 | u | U 1 (A) | non-polymer(GOL) | GLYCEROL | 323S(Y) 340S(T) 341R(S) 342W(K) (identity: 0.0 %/35.1 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5fc1_A_1 identity=35.1% |
queryA 191:PSPPAPGAP-VSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAG-PFDMVYWTGDIPAHD-VW: 287
:* ** ** * **** * * ** * * ** ** * ** * * * **** * * * :
5fc1_A_1 12:PLAPADRAPAVGQFWHVTDLHLDPTY-HITD-DRTKVCASSKGAN---ASNPGP--FGD-VLCDSPYQLILSAFDFIKNSGQEASFMIWTGDSPPHVPVP: 103
SecStr : SS EEEEEE B TT - S-SGGGS GGGTT --- SS BT--TB -TTS B HHHHHHHHHHHHHS SEEEE S S GG:
ExpBur :eeeeeeeeeeebbbbbbbbbbbbeeb-eeee-eeeebbebbeebe---beebbe--bbb-bbbbbbeebbebbbebbeeeeeebbbbbbbbbbbbbbeee:
Contact : sss j f f l lb b o oo c jj j j f i
Contact : i q g l
Contact : i n
queryA 288:HQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYA--LSPYPGLRLISLNMN: 385
: * * * * ** *** * * * * * * *** ** ** **** **** **** *:
5fc1_A_1 104:ELSTGTVIKVITNMTMTVQNLFPNLQVFPALGNHDYWPQDQLPI-------VTSKVYSAVADLWKPWLGEEAISTLKKGGFYSQKVASNPGLRIISLNTN: 196
SecStr :G HHHHHHHHHHHHHHHHHH TT EEEE TTSSSSTT S-------S HHHHHHHHHHTTTS HHHHHHHHHHS EEEE TTSTTEEEEE GG:
ExpBur :ebeeeebeebbeebbebbbeebeebbbbbbbbbbbbeeebbbbe-------eebebbebbbebbeebbeeebbebbeebbbbbbebeebeebbbbbbbbb:
Contact : mmm c c j gi u uuu r ss
Contact : i
queryA 386:FCSRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGH---------CLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSR: 476
: * * **** * ** * ** ** * * * * ** * ** **** * * * :
5fc1_A_1 197:LYYGPNI-MTLNKTDPANQFEWLENTLNSSLWNKEKVYIIAHVPVGYLPYATDTPAIRQYYNEKLLDIFRRYSSVIAGQFYGHTHRDSLMVLSDKN--GN: 293
SecStr :GGSTT G-GGTT SSGGGHHHHHHHHHHHHHHTT EEEEEESS SSB TTSSS BSS HHHHHHHHHHHHHTTTTEEEEEE SS S EEEEEE TT--S :
ExpBur :bbbeebe-ebeeeebbbebbebbeebbeebeeeebebbbbbbbbbbbbbebeeebbbbeebbeebbebbeebbebbebbbbbbbbbbbbbbbbeee--ee:
Contact : r rr e e g gnfn
Contact : i i
Contact : n n
queryA 477:PLAVAFLAPSATTYIGL------NPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRM-RGDMQLF: 569
:** * ** * * *** * * * ** * **** ** * * * * * * ** * *:
5fc1_A_1 294:PLNSVFVAPAVTPVKGVLQKETNNPGVRLFQ----YKPGDYTLLDMVQYYLNLTEANLKGE-SNWTLEYVLTQAYSVADLQPKSLYALVQQFATKDSKQF: 388
SecStr :EEEEEEE S TT S EEEEEE----E TTT EEEEEEEE HHHHHHHT - EEEEEHHHHHT S S HHHHHHHHHHHTSTT HHH:
ExpBur :bebbbbbbbbbbbbbeeeeebbbbbbbbbbe----beeeebebebbbbbbbebeebbeeee-eebeebbbbbebbebebbeeeebeebbeebeeeebebb:
Contact : lllokkkk q s s q d d dd t h h q p
Contact : no l t
Contact : n
queryA 570:QTFWFLYHKGHPPSEPCGTPCRLATLCA--QLSARADSPALCRHL: 612
: * * * * ** * * **:
5fc1_A_1 389:LKYYHYYFVSYDSSATCDQHCKTLQVCAIMNLDSMSYDDCLKQHL: 433
SecStr :HHHHHHHTTTS TT HHHHHHHHHHHH SHHHHHHHHHHH :
ExpBur :eebbebbbbeebeebebeeebbbbbbbbbbbbbbebbeebbeeee:
Contact : do
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