Protein Model on 1tu4 assembly_id=7
(TEMPLATE: 
1tu4
assembly_id:7
)Protein Model on 1tu4 assembly_id=7
(TEMPLATE: 1tu4
assembly_id:7
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | c(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [169 aa] | Ras-related protein Rab-5A :RAB5A_HUMAN | 68E 69R 70F(Y) 71Q(H) 72S 73L 75V(P) 76A(U) 79R 101S(N) 102W 105E 108I(R) (identity: 53.8 %/43.7 %) | |
| 2 | b | A 2 (A) | polymer(polypeptide(L)) [169 aa] | Ras-related protein Rab-5A :RAB5A_HUMAN | 23S 26N(L) 27Q(R) 31K(G) 32K(Q) 33F 37Y(Q) 44D(A) 156A 157K (identity: 40.0 %/43.7 %) | |
| 3 | c | A(RAB7A_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [162 aa] | Ras-related protein Rab-5A :RAB5A_HUMAN | |
| 4 | d | B 2 (B) | polymer(polypeptide(L)) [162 aa] | Ras-related protein Rab-5A :RAB5A_HUMAN | 39A(S) 41I 67Q 69R 70F(Y) (identity: 60.0 %/43.7 %) | |
| 5 | e | E 1 (A) | non-polymer(CO) | COBALT (II) ION | ||
| 6 | f | E 2 (A) | non-polymer(CO) | COBALT (II) ION | ||
| 7 | g | F 1 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | ||
| 8 | h | F 2 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | ||
| 9 | i | G 1 (B) | non-polymer(CO) | COBALT (II) ION | 22T(S) 63D (identity: 50.0 %/43.7 %) | |
| 10 | j | G 2 (B) | non-polymer(CO) | COBALT (II) ION | ||
| 11 | k | H 1 (B) | non-polymer(CO) | COBALT (II) ION | 68E 71Q(H) (identity: 50.0 %/43.7 %) | |
| 12 | l | H 2 (B) | non-polymer(CO) | COBALT (II) ION | ||
| 13 | m | I 1 (B) | non-polymer(SO4) | SULFATE ION | 67Q 68E 69R (identity: 100.0 %/43.7 %) | |
| 14 | n | I 2 (B) | non-polymer(SO4) | SULFATE ION | ||
| 15 | o | J 1 (B) | non-polymer(SO4) | SULFATE ION | 65A 66G 67Q (identity: 100.0 %/43.7 %) | |
| 16 | p | J 2 (B) | non-polymer(SO4) | SULFATE ION | ||
| 17 | q | K 1 (B) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 16D(E) 17S 18G(A) 19V 20G 21K 22T(S) 23S 125N 126K 128D 129L 155S 156A 157K (identity: 80.0 %/43.7 %) | |
| 18 | r | K 2 (B) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | ||
| ALIGNMENTS |
| MODEL[3] Protein A "queryA" TEMPLATE:1tu4_B_1 identity=43.7% |
queryA 9:LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI: 108
: * ** * *** ** * * **** *** * ** * ********* ** **** * * * * * * :
1tu4_B_1 8:FKLVLLGESAVGKSSLVLRFVKGQFXXXQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPUYYRGAQAAIVVYDITNEESFARAKNWVKELQR: 107
SecStr :EEEEEE STTSSHHHHHHHHTTT --- S TTEEEEEEEEEETTEEEEEEEEEE SGGGGGGTHHHHTT SEEEEEEETT HHHHHHHHHHHHHHHH:
ExpBur :bebbbbbbeebbbeebbeebbeeee---eeeeebbebbeeebeeeeeebebebbbbeeeeeebeebbebbeebebbbbbbbbeeeebbeebeebbeebee:
Contact : qqqqqqib bb bbb b d d b i oodaaaaaa aa a aa a a
Contact : qq mkddk
Contact : omm
queryA 109:QASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
:**** * *** ** * * * ** * ***** ** * ** :
1tu4_B_1 108:QASP----NIVIALSGNKADLANKRAVDFQEAQSYA-DDNSLLFUETSAKTSUNVNEIFUAIAK: 166
SecStr :HS T----T EEEEEEE GGGGGG S HHHHHHHH-HHTT EEEE TTT TTHHHHHHHHHH:
ExpBur :ebee----ebbbbbbbbebeeeeeeebeeeebeebb-eeeebebebbbbeeeeebeebbebbbe:
Contact : qq qq qbb
Contact : qq
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