Protein Model on 1tu4 assembly_id=7
(TEMPLATE: 
1tu4
assembly_id:7
)Protein Model on 1tu4 assembly_id=7
(TEMPLATE: 1tu4
assembly_id:7
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RAB7A_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [169 aa] | Ras-related protein Rab-5A :RAB5A_HUMAN | |
| 2 | b | A 2 (A) | polymer(polypeptide(L)) [169 aa] | Ras-related protein Rab-5A :RAB5A_HUMAN | ||
| 3 | c | B 1 (B) | polymer(polypeptide(L)) [162 aa] | Ras-related protein Rab-5A :RAB5A_HUMAN | 41I 42G 43A 44D(A) 45F 65A 67Q 69R 70F(Y) 71Q(H) 72S 73L 74G(A) 75V(P) 76A(U) (identity: 60.0 %/43.7 %) | |
| 4 | d | B 2 (B) | polymer(polypeptide(L)) [162 aa] | Ras-related protein Rab-5A :RAB5A_HUMAN | 9L(F) 79R 80G 81A 82D(Q) 111S 112P 117N (identity: 75.0 %/43.7 %) | |
| 5 | e | E 1 (A) | non-polymer(CO) | COBALT (II) ION | 22T(S) (identity: 0.0 %/43.7 %) | |
| 6 | f | E 2 (A) | non-polymer(CO) | COBALT (II) ION | ||
| 7 | g | F 1 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 16D(E) 18G(A) 19V 20G 21K 22T(S) 23S 125N 126K 128D 129L 155S 156A 157K (identity: 78.6 %/43.7 %) | |
| 8 | h | F 2 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | ||
| 9 | i | G 1 (B) | non-polymer(CO) | COBALT (II) ION | ||
| 10 | j | G 2 (B) | non-polymer(CO) | COBALT (II) ION | ||
| 11 | k | H 1 (B) | non-polymer(CO) | COBALT (II) ION | 70F(Y) 71Q(H) (identity: 0.0 %/43.7 %) | |
| 12 | l | H 2 (B) | non-polymer(CO) | COBALT (II) ION | ||
| 13 | m | I 1 (B) | non-polymer(SO4) | SULFATE ION | ||
| 14 | n | I 2 (B) | non-polymer(SO4) | SULFATE ION | ||
| 15 | o | J 1 (B) | non-polymer(SO4) | SULFATE ION | ||
| 16 | p | J 2 (B) | non-polymer(SO4) | SULFATE ION | ||
| 17 | q | K 1 (B) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | ||
| 18 | r | K 2 (B) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 107L(Q) 108I(R) 110A 111S 112P (identity: 60.0 %/43.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:1tu4_A_1 identity=43.7% |
queryA 9:LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI: 108
: * ** * *** ** * * **** *** * ** * ********* ** **** * * * * * * :
1tu4_A_1 8:FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPUYYRGAQAAIVVYDITNEESFARAKNWVKELQR: 107
SecStr :EEEEEE STTSSHHHHHHHHHHTS B EE GGG EEEEEEE TTSSEEEEEEEESSGGGTS HHHHTTEEEEEEEEETT HHHHHHHHHHHHHHHH:
ExpBur :bbbbbbbeeebbbeebbeebbeebeeeeeeeeeeeebebbbbebeeeebebebbbbeeebeeeebeeebbeebebbbbbbbbeeeebbeebeebbeebee:
Contact :d g ggggeg ccccc c c cccccccc dddd rr
Contact : g kk
queryA 109:QASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
:**** * *** ** * * * ** * ***** ** * ** :
1tu4_A_1 108:QASP----NIVIALSGNKADLANKRAVDFQEAQSYA-DDNSLLFUETSAKTSUNVNEIFUAIAK: 166
SecStr :HS T----T EEEEEEE TT GGG S HHHHHHHH-HHTT EEEE TTT TTHHHHHHHHHH:
ExpBur :ebee----ebbbbbbbbebeeeeeeebeeeebbebb-eeeebbbebbbbeeeeebeebbeebbe:
Contact : rdd d gg gg ggg
Contact : rr
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