Protein Model on 1tu4 assembly_id=5 (TEMPLATE: 1tu4 assembly_id:5 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description c(query A)
1 a A 1 (A) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 68E 69R 70F(Y) 71Q(H) 72S 73L 75V(P) 76A(U) 79R 101S(N) 102W 105E 108I(R) (identity: 53.8 %/43.7 %)
2 b A 2 (A) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 23S 26N(L) 27Q(R) 31K(G) 32K(Q) 33F 37Y(Q) 44D(A) 156A 157K (identity: 40.0 %/43.7 %)
3 c A(RAB7A_HUMAN) B 1 (B) polymer(polypeptide(L)) [162 aa] Ras-related protein Rab-5A :RAB5A_HUMAN
4 d B 2 (B) polymer(polypeptide(L)) [162 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 39A(S) 41I 67Q 69R 70F(Y) (identity: 60.0 %/43.7 %)
5 e C 1 (C) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 32K(Q) 58T(K) (identity: 0.0 %/43.7 %)
6 f C 2 (C) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-5A :RAB5A_HUMAN
7 g D 1 (D) polymer(polypeptide(L)) [164 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 79R 109Q 117N (identity: 100.0 %/43.7 %)
8 h D 2 (D) polymer(polypeptide(L)) [164 aa] Ras-related protein Rab-5A :RAB5A_HUMAN
9 i E 1 (A) non-polymer(CO) COBALT (II) ION
10 j E 2 (A) non-polymer(CO) COBALT (II) ION
11 k F 1 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
12 l F 2 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
13 m G 1 (B) non-polymer(CO) COBALT (II) ION 22T(S) 63D (identity: 50.0 %/43.7 %)
14 n G 2 (B) non-polymer(CO) COBALT (II) ION
15 o H 1 (B) non-polymer(CO) COBALT (II) ION 68E 71Q(H) (identity: 50.0 %/43.7 %)
16 p H 2 (B) non-polymer(CO) COBALT (II) ION
17 q I 1 (B) non-polymer(SO4) SULFATE ION 67Q 68E 69R (identity: 100.0 %/43.7 %)
18 r I 2 (B) non-polymer(SO4) SULFATE ION
19 s J 1 (B) non-polymer(SO4) SULFATE ION 65A 66G 67Q (identity: 100.0 %/43.7 %)
20 t J 2 (B) non-polymer(SO4) SULFATE ION
21 u K 1 (B) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE 16D(E) 17S 18G(A) 19V 20G 21K 22T(S) 23S 125N 126K 128D 129L 155S 156A 157K (identity: 80.0 %/43.7 %)
22 v K 2 (B) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
23 w L 1 (C) non-polymer(CO) COBALT (II) ION
24 x L 2 (C) non-polymer(CO) COBALT (II) ION
25 y M 1 (C) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
26 z M 2 (C) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
27 1 N 1 (D) non-polymer(CO) COBALT (II) ION
28 2 N 2 (D) non-polymer(CO) COBALT (II) ION
29 3 O 1 (D) non-polymer(CO) COBALT (II) ION
30 4 O 2 (D) non-polymer(CO) COBALT (II) ION
31 5 P 1 (D) non-polymer(SO4) SULFATE ION
32 6 P 2 (D) non-polymer(SO4) SULFATE ION
33 7 Q 1 (D) non-polymer(SO4) SULFATE ION
34 8 Q 2 (D) non-polymer(SO4) SULFATE ION
35 9 R 1 (D) non-polymer(SO4) SULFATE ION 109Q (identity: 100.0 %/43.7 %)
36 A R 2 (D) non-polymer(SO4) SULFATE ION
37 B S 1 (D) non-polymer(SO4) SULFATE ION
38 C S 2 (D) non-polymer(SO4) SULFATE ION
39 D T 1 (D) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
40 E T 2 (D) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
ALIGNMENTS
MODEL[3] Protein A "queryA" TEMPLATE:1tu4_B_1 identity=43.7%
queryA         9:LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI: 108
                : *   ** * *** **    *   *      **** ***  *  **  *   *********  **    ****     * * *    *     *  *   :
1tu4_B_1       8:FKLVLLGESAVGKSSLVLRFVKGQFXXXQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPUYYRGAQAAIVVYDITNEESFARAKNWVKELQR: 107
SecStr          :EEEEEE STTSSHHHHHHHHTTT  ---  S TTEEEEEEEEEETTEEEEEEEEEE  SGGGGGGTHHHHTT SEEEEEEETT HHHHHHHHHHHHHHHH:    
ExpBur          :bebbbbbbeebbbeebbeebbeeee---eeeeebbebbeeebeeeeeebebebbbbeeeeeebeebbebbeebebbbbbbbbeeeebbeebeebbeebee:    
Contact         :       uuuuuumb  bb   bbb   b d d  b             e    m ssdaaaaaa aa  a                     aa  a  a
Contact         :             uu        e                                  qoddo       g                             
Contact         :                                                          sqq                                       

queryA       109:QASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
                :****    *      *** ** * * *    **      *     *****   **   *  ** :
1tu4_B_1     108:QASP----NIVIALSGNKADLANKRAVDFQEAQSYA-DDNSLLFUETSAKTSUNVNEIFUAIAK: 166
SecStr          :HS T----T EEEEEEE GGGGGG  S HHHHHHHH-HHTT EEEE  TTT TTHHHHHHHHHH:    
ExpBur          :ebee----ebbbbbbbbebeeeeeeebeeeebeebb-eeeebebebbbbeeeeebeebbebbbe:    
Contact         :g       g       uu uu                          ubb                                                  
Contact         :9                                               uu

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