Protein Model on 1vg9 assembly_id=4
(TEMPLATE: 
1vg9
assembly_id:4
)Protein Model on 1vg9 assembly_id=4
(TEMPLATE: 1vg9
assembly_id:4
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | G 1 (G) | polymer(polypeptide(L)) [502 aa] | Rab proteins geranylgeranyltransferase component A 1 :RAE1_RAT | 17S 42G 44D 45F 62W 63D 65A 67Q 69R 70F 71Q 72S 74G 75V 76A 77F 79R 108I 111S (identity: 100.0 %/98.3 %) | |
| 2 | b | A(RAB7A_HUMAN) | H 1 (H) | polymer(polypeptide(L)) [173 aa] | Ras-related protein Rab-7 :RAB7_RAT | |
| 3 | c | U 1 (H) | non-polymer(MG) | MAGNESIUM ION | 22T 63D (identity: 100.0 %/98.3 %) | |
| 4 | d | V 1 (H) | non-polymer(K) | POTASSIUM ION | 71Q (identity: 100.0 %/98.3 %) | |
| 5 | e | W 1 (H) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 16D 17S 18G 19V 20G 21K 22T 23S 33F 125N 126K 128D 129L 155S 156A 157K (identity: 100.0 %/98.3 %) | |
| 6 | f | X 1 (H) | non-polymer(P33) | 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL | 71Q 98T 101S 102W 105E (identity: 100.0 %/98.3 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:1vg9_H_1 identity=98.3% |
queryA 6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE: 105
:******************************** *****************************************************************:
1vg9_H_1 6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYXXXIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE: 105
SecStr : EEEEEEE TTS HHHHHHHHHH --- EEEEEEEETTEEEEEEEE TTGGGGT GGGTTT SEEEEEEETT HHHHHTHHHHHHH:
ExpBur :ebebbbbbbbbeebbbeebbebbbeeeeeeee---eeeeeeeeebebeeeebebbbebbeeebeeeebeeebbeebbbbbbbbbbeeeebbeebeebbee:
Contact : eaeeeece e a aa aa a a aaaa aaaa a f ff f
Contact : e e c d
Contact : f
queryA 106:FLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE: 181
:****************************************************************************:
1vg9_H_1 106:FLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE: 181
SecStr :HHHHH SSGGG EEEEEE TTSS S HHHHHHHHHHTT EEE BTTTTBSHHHHHHHHHHHHHHHHHHH :
ExpBur :bbeebeeeeeeebbbbbbbbeeeeeeeebeeeebeebbeeeeebebbbbbbeeeeebeebbebbbebbbebbeeee:
Contact : a a ee ee eee
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