Protein Model on 1s8f assembly_id=4
(TEMPLATE: 
1s8f
assembly_id:4
)Protein Model on 1s8f assembly_id=4
(TEMPLATE: 1s8f
assembly_id:4
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RAB7A_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [168 aa] | Ras-related protein Rab-9A :RAB9A_CANFA | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [173 aa] | Ras-related protein Rab-9A :RAB9A_CANFA | 22T(S) 25M 26N 32K 36Q 37Y(L) 38K(F) 39A(H) 40T 41I 42G 43A(V) 44D(E) 45F 46L 62W 73L 77F (identity: 66.7 %/57.5 %) | |
| 3 | c | C 1 (A) | non-polymer(SR) | STRONTIUM ION | 22T(S) (identity: 0.0 %/57.5 %) | |
| 4 | d | D 1 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 16D 17S(G) 18G 19V 20G 21K 22T(S) 23S 33F 63D 125N 126K 128D 129L(I) 155S 156A 157K (identity: 82.4 %/57.5 %) | |
| 5 | e | E 1 (A) | non-polymer(BEZ) | BENZOIC ACID | 71Q(R) 72S (identity: 50.0 %/57.5 %) | |
| 6 | f | F 1 (A) | non-polymer(BEZ) | BENZOIC ACID | 41I 69R (identity: 100.0 %/57.5 %) | |
| 7 | g | G 1 (A) | non-polymer(BEZ) | BENZOIC ACID | 39A(H) 40T 41I 67Q (identity: 75.0 %/57.5 %) | |
| 8 | h | H 1 (B) | non-polymer(MG) | MAGNESIUM ION | ||
| 9 | i | I 1 (B) | non-polymer(SR) | STRONTIUM ION | ||
| 10 | j | J 1 (B) | non-polymer(CL) | CHLORIDE ION | ||
| 11 | k | K 1 (B) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | ||
| 12 | l | L 1 (B) | non-polymer(BEZ) | BENZOIC ACID | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:1s8f_A_1 identity=57.5% |
queryA 8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
:* *** *** **** **** ** ** * *** ** * ** ************** ** **** *** * * * * * * ** :
1s8f_A_1 9:LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFI: 108
SecStr :EEEEEEE TTSSHHHHHHHHHHS S SSEEEEEEEEEETTEEEEEEEEEE GGGHHHHGGG TT SEEEEEEETT HHHHHTHHHHHHHHH:
ExpBur :ebbbbbbbbeebbbeebbbbbeeeeeeeeeeeeebbbeeeeeeebeeeebbbbbbbbbbeeebeeebbeebeebebbbbbbbbeeeebbeebeebbebbe:
Contact : ddddddbd bb bd bbbbbbbbbbb bd g f eeb b
Contact : c ggf
Contact : d g
queryA 108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL: 174
: * ** **** ****** *** * ***** ******** * ** ** * *:
1s8f_A_1 109:YYADVXXPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL: 175
SecStr :HHH -- TTS EEEEEE TT SS SS HHHHHHHHHHTT EEE TTT TTHHHHHHHHHHHHH:
ExpBur :eebee--eeebebbbbbbeeeeeeeebeeeebeebbeeeeebbbbbbbbeeeeebeebbebbbeebe:
Contact : dd dd ddd
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