Protein Model on 1s8f assembly_id=3
(TEMPLATE: 
1s8f
assembly_id:3
)Protein Model on 1s8f assembly_id=3
(TEMPLATE: 1s8f
assembly_id:3
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | c(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [168 aa] | Ras-related protein Rab-9A :RAB9A_CANFA | 22T(S) 25M 26N 29V 30N(T) 34S(D) 37Y(L) 38K(F) 39A(H) 40T 41I 42G 43A(V) 44D(E) 45F 46L 62W 70F 73L (identity: 57.9 %/56.5 %) | |
| 2 | b | A 2 (A) | polymer(polypeptide(L)) [168 aa] | Ras-related protein Rab-9A :RAB9A_CANFA | 71Q(R) 72S 75V(T) 79R 108I(Y) 109Q(Y) 111S(D) (identity: 28.6 %/56.5 %) | |
| 3 | c | A(RAB7A_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [173 aa] | Ras-related protein Rab-9A :RAB9A_CANFA | |
| 4 | d | B 2 (B) | polymer(polypeptide(L)) [173 aa] | Ras-related protein Rab-9A :RAB9A_CANFA | 69R 70F 71Q(R) 72S 74G(R) (identity: 60.0 %/56.5 %) | |
| 5 | e | C 1 (A) | non-polymer(SR) | STRONTIUM ION | ||
| 6 | f | C 2 (A) | non-polymer(SR) | STRONTIUM ION | ||
| 7 | g | D 1 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | ||
| 8 | h | D 2 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | ||
| 9 | i | E 1 (A) | non-polymer(BEZ) | BENZOIC ACID | ||
| 10 | j | E 2 (A) | non-polymer(BEZ) | BENZOIC ACID | 72S 73L (identity: 100.0 %/56.5 %) | |
| 11 | k | F 1 (A) | non-polymer(BEZ) | BENZOIC ACID | 62W 73L 76A(P) 77F (identity: 75.0 %/56.5 %) | |
| 12 | l | F 2 (A) | non-polymer(BEZ) | BENZOIC ACID | ||
| 13 | m | G 1 (A) | non-polymer(BEZ) | BENZOIC ACID | 45F (identity: 100.0 %/56.5 %) | |
| 14 | n | G 2 (A) | non-polymer(BEZ) | BENZOIC ACID | ||
| 15 | o | H 1 (B) | non-polymer(MG) | MAGNESIUM ION | 22T(S) 44D(E) (identity: 0.0 %/56.5 %) | |
| 16 | p | H 2 (B) | non-polymer(MG) | MAGNESIUM ION | ||
| 17 | q | I 1 (B) | non-polymer(SR) | STRONTIUM ION | 70F 71Q(R) 72S (identity: 66.7 %/56.5 %) | |
| 18 | r | I 2 (B) | non-polymer(SR) | STRONTIUM ION | 70F 71Q(R) 72S (identity: 66.7 %/56.5 %) | |
| 19 | s | J 1 (B) | non-polymer(CL) | CHLORIDE ION | 71Q(R) 74G(R) 75V(T) 109Q(Y) (identity: 0.0 %/56.5 %) | |
| 20 | t | J 2 (B) | non-polymer(CL) | CHLORIDE ION | ||
| 21 | u | K 1 (B) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 16D 17S(G) 18G 19V 20G 21K 22T(S) 23S 33F 125N 126K 128D 129L(I) 155S 156A 157K (identity: 81.2 %/56.5 %) | |
| 22 | v | K 2 (B) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | ||
| 23 | w | L 1 (B) | non-polymer(BEZ) | BENZOIC ACID | 43A(V) 64T 68E 69R 70F 71Q(R) 73L 74G(R) 77F (identity: 66.7 %/56.5 %) | |
| 24 | x | L 2 (B) | non-polymer(BEZ) | BENZOIC ACID | ||
| ALIGNMENTS |
| MODEL[3] Protein A "queryA" TEMPLATE:1s8f_B_1 identity=56.5% |
queryA 5:KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRD: 104
:* * *** *** **** **** ** ** *** ** * ** ************** ** **** *** * * * * * * :
1s8f_B_1 6:KSSLFKVILLGDGGVGKSSLMNRYVTNKFDXXLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK: 105
SecStr : EEEEEEEEE TTSSHHHHHHHHHHS -- EEEEEEEEEEETTEEEEEEEEEEESS HHHHHHHHTT SEEEEEEETT HHHHHTHHHHHH:
ExpBur :eebebbbbbbbbeebbbeebbbbbbeebee--eeeeebebeeeeeeeeeebebebebbbbbeeeeeeeeeeebbeebebbbbbbbbeeeebbebbeebbe:
Contact : uuuuuuau aa aa ua aaaaaaaaaa a w wdabbadbkk b
Contact : o wom k wdddjss w
Contact : u qqjkw
Contact : rrqw
Contact : wsr
Contact : w
queryA 105:EFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL: 174
:** * ** **** ****** *** * ***** ******** * ** ** * *:
1s8f_B_1 106:EFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL: 175
SecStr :HHHHHTT S GGGS EEEEEE TT S SS HHHHHHHHHHTT EEE TTT TTHHHHHHHHHHHH :
ExpBur :ebeeebebeeeeebbbbbbbbeeeeeeeebeeeebeebbeeeeebebbbbbbeeeeebeebbeebbebee:
Contact : bb b uu uu uuu
Contact : s
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