Protein Model on 1s8f assembly_id=3 (TEMPLATE: 1s8f assembly_id:3 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [168 aa] Ras-related protein Rab-9A :RAB9A_CANFA
2 b A 2 (A) polymer(polypeptide(L)) [168 aa] Ras-related protein Rab-9A :RAB9A_CANFA 69R 71Q(R) (identity: 50.0 %/57.5 %)
3 c B 1 (B) polymer(polypeptide(L)) [173 aa] Ras-related protein Rab-9A :RAB9A_CANFA 22T(S) 25M 26N 32K 36Q 37Y(L) 38K(F) 39A(H) 40T 41I 42G 43A(V) 44D(E) 45F 46L 62W 73L 77F (identity: 66.7 %/57.5 %)
4 d B 2 (B) polymer(polypeptide(L)) [173 aa] Ras-related protein Rab-9A :RAB9A_CANFA 72S 76A(P) 77F 79R 108I(Y) 111S(D) (identity: 50.0 %/57.5 %)
5 e C 1 (A) non-polymer(SR) STRONTIUM ION 22T(S) (identity: 0.0 %/57.5 %)
6 f C 2 (A) non-polymer(SR) STRONTIUM ION
7 g D 1 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE 16D 17S(G) 18G 19V 20G 21K 22T(S) 23S 33F 63D 125N 126K 128D 129L(I) 155S 156A 157K (identity: 82.4 %/57.5 %)
8 h D 2 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
9 i E 1 (A) non-polymer(BEZ) BENZOIC ACID 71Q(R) 72S (identity: 50.0 %/57.5 %)
10 j E 2 (A) non-polymer(BEZ) BENZOIC ACID 69R 70F 72S 73L (identity: 100.0 %/57.5 %)
11 k F 1 (A) non-polymer(BEZ) BENZOIC ACID 41I 69R (identity: 100.0 %/57.5 %)
12 l F 2 (A) non-polymer(BEZ) BENZOIC ACID
13 m G 1 (A) non-polymer(BEZ) BENZOIC ACID 39A(H) 40T 41I 67Q (identity: 75.0 %/57.5 %)
14 n G 2 (A) non-polymer(BEZ) BENZOIC ACID
15 o H 1 (B) non-polymer(MG) MAGNESIUM ION
16 p H 2 (B) non-polymer(MG) MAGNESIUM ION
17 q I 1 (B) non-polymer(SR) STRONTIUM ION
18 r I 2 (B) non-polymer(SR) STRONTIUM ION
19 s J 1 (B) non-polymer(CL) CHLORIDE ION
20 t J 2 (B) non-polymer(CL) CHLORIDE ION
21 u K 1 (B) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
22 v K 2 (B) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
23 w L 1 (B) non-polymer(BEZ) BENZOIC ACID
24 x L 2 (B) non-polymer(BEZ) BENZOIC ACID
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1s8f_A_1 identity=57.5%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *** *** **** **** **  **  *   ***  ** *   **   ************** **   **** *** * * *     *  *  *  ** :
1s8f_A_1       9:LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFI: 108
SecStr          :EEEEEEE  TTSSHHHHHHHHHHS   S     SSEEEEEEEEEETTEEEEEEEEEE   GGGHHHHGGG TT SEEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebbbbbbbbeebbbeebbbbbeeeeeeeeeeeeebbbeeeeeeebeeeebbbbbbbbbbeeebeeebbeebeebebbbbbbbbeeeebbeebeebbebbe:    
Contact         :        ggggggcg cc     cg  ccccccccccc               cg   m bjbdc  dc d                            
Contact         :              e                mmk                           j iij   d                              
Contact         :              g                  m                           k  j                                   

queryA       108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL: 174
                :  *    ** **** ******   *** *  *****      ******** * **  **    *  *:
1s8f_A_1     109:YYADVXXPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL: 175
SecStr          :HHH  -- TTS EEEEEE TT SS SS HHHHHHHHHHTT   EEE  TTT TTHHHHHHHHHHHHH:    
ExpBur          :eebee--eeebebbbbbbeeeeeeeebeeeebeebbeeeeebbbbbbbbeeeeebeebbebbbeebe:    
Contact         :d  d             gg gg                         ggg

Input Residue Numbers for Focused Sites

ex) 2,15,123