Protein Model on 3nkv assembly_id=2
(TEMPLATE: 
3nkv
assembly_id:2
)Protein Model on 3nkv assembly_id=2
(TEMPLATE: 3nkv
assembly_id:2
)| CurrentView:JAVA Change to:[HTML5] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RAB7A_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [169 aa] | Ras-related protein Rab-1B :RAB1B_HUMAN | |
| 2 | b | G 1 (B) | non-polymer(GNP) | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | 16D 17S 18G 19V 20G 21K 22T(S) 23S(C) 33F(Y) 35N(E) 40T 64T 65A 66G 125N 126K 128D 129L 155S 156A 157K (identity: 81.0 %/39.6 %) | |
| 3 | c | H 1 (B) | non-polymer(MG) | MAGNESIUM ION | 22T(S) 40T (identity: 50.0 %/39.6 %) | |
| 4 | d | I 1 (B) | non-polymer(BA) | BARIUM ION | 136T(D) 138R(T) (identity: 0.0 %/39.6 %) | |
| 5 | e | J 1 (B) | non-polymer(AMP) | ADENOSINE MONOPHOSPHATE | 10K 45F 60Q 62W 77F(Y) (identity: 80.0 %/39.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3nkv_B_1 identity=39.6% |
queryA 8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
:* * ******* * * *** ** * *********** **** * *** * * :
3nkv_B_1 9:LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEID: 108
SecStr :EEEEEEEE TTSSHHHHHHHHHHS SS SEEEEEEEEEETTEEEEEEEEEE SGGGHHHHHTTSTT SEEEEEEETT HHHHHTHHHHHHHHH:
ExpBur :ebebbbbbbeebbbbbbbbbbeeeeeeeeeeebebbeeeeeebebeeebbebbbbbbbbeeebeeebbeebeebebbbbbbbbeeeebbebbeebbebbe:
Contact : e bbbbbbbb b b b e e e bbb e
Contact : c c
queryA 108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA: 170
: ** * *** ** * ** ***** * ****** * *:
3nkv_B_1 109:RYASX----NVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMA: 167
SecStr :HH ----- EEEEEEE TT TTT S HHHHHHHHHHTT EEEE TTT TTHHHHHHHHH:
ExpBur :ebee-----ebbbbbbbbeeeeeeeeebeeeebeebbeeeebebbbbbbeeeeebeebbebbb:
Contact : bb bb d d bbb
|
[help]