Protein Model on 1zbd assembly_id=2
(TEMPLATE: 
1zbd
assembly_id:2
)Protein Model on 1zbd assembly_id=2
(TEMPLATE: 1zbd
assembly_id:2
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RAB7A_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [177 aa] | RABPHILIN-3A :RAB3A_RAT | |
| 2 | b | A 2 (A) | polymer(polypeptide(L)) [177 aa] | RABPHILIN-3A :RAB3A_RAT | 54D 55R(K) (identity: 50.0 %/34.0 %) | |
| 3 | c | B 1 (B) | polymer(polypeptide(L)) [124 aa] | RABPHILIN-3A :RP3A_RAT | 8L(U) 10K 41I(V) 43A(I) 44D 45F 47T(V) 58T(K) 60Q 62W 69R 70F(Y) 73L(I) 76A 77F(Y) 79R 80G 81A 82D(U) 115P(W) 117N 118F(A) (identity: 50.0 %/34.0 %) | |
| 4 | d | B 2 (B) | polymer(polypeptide(L)) [124 aa] | RABPHILIN-3A :RP3A_RAT | 30N(D) 48K 49E(T) 50V(I) 51M(Y) 52V(R) 56L(R) 163E(K) 167Q(E) (identity: 11.1 %/34.0 %) | |
| 5 | e | C 1 (A) | non-polymer(MG) | MAGNESIUM ION | 22T 40T (identity: 100.0 %/34.0 %) | |
| 6 | f | C 2 (A) | non-polymer(MG) | MAGNESIUM ION | ||
| 7 | g | D 1 (A) | non-polymer(GTP) | GUANOSINE-5'-TRIPHOSPHATE | 16D(N) 17S 18G(S) 19V 20G 21K 22T 23S 33F 34S(T) 35N(P) 36Q(A) 37Y(F) 39A(S) 40T 66G 125N 126K 128D 129L(U) 155S 156A 157K (identity: 65.2 %/34.0 %) | |
| 8 | h | D 2 (A) | non-polymer(GTP) | GUANOSINE-5'-TRIPHOSPHATE | ||
| 9 | i | E 1 (B) | non-polymer(ZN) | ZINC ION | ||
| 10 | j | E 2 (B) | non-polymer(ZN) | ZINC ION | ||
| 11 | k | F 1 (B) | non-polymer(ZN) | ZINC ION | ||
| 12 | l | F 2 (B) | non-polymer(ZN) | ZINC ION | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:1zbd_A_1 identity=34.0% |
queryA 8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
: * * * * ***** * * * * ** * * ******* ** * **** * * * * * :
1zbd_A_1 8:UFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAUGFILUYDITNEESFNAVQDWS----: 103
SecStr :EEEEEEE STTSSHHHHHHHHHT S SEEEEEEEEEETTEEEEEEEEEE SGGGHHHHHTTGGG SEEEEEEETT HHHHHHHHHHH----:
ExpBur :ebbbbbbbeeebbbeebbebbeeeeeeeeeeebebeeeeeeebeeeeeebbbebbbbbbeeebeeebbeebeebebbbbbbbbeeeebbebbeebb----:
Contact :c c ggggggeg d ggggg gec ccc cddddd bbd c c c g cc c cc cccc
Contact : g g
queryA 108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA: 170
: * * *** * * * ** *** *** * * :
1zbd_A_1 104:TQIKTYSWDNAQVLLVGNKCDUEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV: 166
SecStr :HHHHHHS SS EEEEEEE TT TTS S HHHHHHHHHHHT EEEE BTTTTBSSHHHHHHHH:
ExpBur :ebbeeebeeebebbbbbbebeeeeeeebeeeebeebbeebebebbbbbbeeeeebeebbeebb:
Contact : c cc gg gg ggg d d
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