Protein Model on 7u05 assembly_id=1 (TEMPLATE: 7u05 assembly_id:1 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description k(query A)
1 a A 1 (M) polymer(polypeptide(L)) [227 aa] Trafficking protein particle complex II-specific subunit 130
2 b B 1 (C) polymer(polypeptide(L)) [286 aa] Trafficking protein particle complex II-specific subunit 65 :TRS65_YEAST
3 c C 1 (D) polymer(polypeptide(L)) [140 aa] TRAPP-associated protein TCA17 :TCA17_YEAST
4 d D 1 (E) polymer(polypeptide(L)) [207 aa] Trafficking protein particle complex subunit 33 :TRS33_YEAST
5 e E 1 (F) polymer(polypeptide(L)) [186 aa] Trafficking protein particle complex subunit BET3 :BET3_YEAST 17S 36Q(E) 39A(S) 67Q (identity: 50.0 %/36.3 %)
6 f F 1 (G) polymer(polypeptide(L)) [156 aa] Trafficking protein particle complex subunit BET5 :BET5_YEAST 33F 34S(N) 40T 69R (identity: 75.0 %/36.3 %)
7 g G 1 (H) polymer(polypeptide(L)) [179 aa] Trafficking protein particle complex subunit 23 :TRS23_YEAST 8L 9L(F) 10K 33F 41I 45F 47T 58T(K) 60Q 62W 72S(A) 73L(I) 77F(Y) 79R 80G (identity: 66.7 %/36.3 %)
8 h H 1 (I) polymer(polypeptide(L)) [184 aa] Trafficking protein particle complex subunit BET3 :BET3_YEAST 79R (identity: 100.0 %/36.3 %)
9 i I 1 (J) polymer(polypeptide(L)) [210 aa] Trafficking protein particle complex subunit 31 :TRS31_YEAST
10 j J 1 (K) polymer(polypeptide(L)) [146 aa] Trafficking protein particle complex subunit 20 :TRS20_YEAST
11 k A(RAB7A_HUMAN) K 1 (L) polymer(polypeptide(L)) [193 aa] GTP-binding protein YPT32/YPT11 :YPT32_YEAST
12 l L 1 (B) polymer(polypeptide(L)) [815 aa] Trafficking protein particle complex II-specific subunit 130 :TR130_YEAST
13 m M 1 (m) polymer(polypeptide(L)) [227 aa] Trafficking protein particle complex II-specific subunit 130
14 n N 1 (A) polymer(polypeptide(L)) [1114 aa] Trafficking protein particle complex II-specific subunit 120 :TR120_YEAST 119P(A) 130E(A) 131N(H) 132R 135A(P) 136T 138R(E) 140Q(K) 144Y(M) 148N(Q) 149I(M) 150P(L) 151Y(F) 152F(T) 158E(N) 161N 164Q(K) 168T(E) (identity: 16.7 %/36.3 %)
15 o O 1 (c) polymer(polypeptide(L)) [286 aa] Trafficking protein particle complex II-specific subunit 65 :TRS65_YEAST
16 p P 1 (d) polymer(polypeptide(L)) [140 aa] TRAPP-associated protein TCA17 :TCA17_YEAST
17 q Q 1 (e) polymer(polypeptide(L)) [207 aa] Trafficking protein particle complex subunit 33 :TRS33_YEAST
18 r R 1 (f) polymer(polypeptide(L)) [186 aa] Trafficking protein particle complex subunit BET3 :BET3_YEAST
19 s S 1 (g) polymer(polypeptide(L)) [156 aa] Trafficking protein particle complex subunit BET5 :BET5_YEAST
20 t T 1 (h) polymer(polypeptide(L)) [179 aa] Trafficking protein particle complex subunit 23 :TRS23_YEAST
21 u U 1 (i) polymer(polypeptide(L)) [184 aa] Trafficking protein particle complex subunit BET3 :BET3_YEAST
22 v V 1 (j) polymer(polypeptide(L)) [210 aa] Trafficking protein particle complex subunit 31 :TRS31_YEAST
23 w W 1 (k) polymer(polypeptide(L)) [146 aa] Trafficking protein particle complex subunit 20 :TRS20_YEAST
24 x X 1 (l) polymer(polypeptide(L)) [193 aa] GTP-binding protein YPT32/YPT11 :YPT32_YEAST
25 y Y 1 (b) polymer(polypeptide(L)) [815 aa] Trafficking protein particle complex II-specific subunit 130 :TR130_YEAST
26 z Z 1 (a) polymer(polypeptide(L)) [1114 aa] Trafficking protein particle complex II-specific subunit 120 :TR120_YEAST
27 1 AA 1 (N) polymer(polypeptide(L)) [132 aa] Trafficking protein particle complex II-specific subunit 65
28 2 BA 1 (n) polymer(polypeptide(L)) [132 aa] Trafficking protein particle complex II-specific subunit 65
29 3 CA 1 (F) non-polymer(PLM) PALMITIC ACID
30 4 DA 1 (I) non-polymer(PLM) PALMITIC ACID
31 5 EA 1 (f) non-polymer(PLM) PALMITIC ACID
32 6 FA 1 (i) non-polymer(PLM) PALMITIC ACID
ALIGNMENTS
MODEL[11] Protein A "queryA" TEMPLATE:7u05_K_1 identity=36.3%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *    *******  *        *    * ***  * *    *       **********      * ****     * *            *  *  :
7u05_K_1      13:LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELR: 112
SecStr          :EEEEE  B TTS HHHHTTTSS   SS   TTTSS  EEEEEEESSS EEEEEEE    SSS SHHHHHTTSS SEEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebbbbbbbbeebbbeebbeebbeeeeeeebbeeebbbebebebebeeeebbbebbbbbeeeebeeebbebbeebbbbbbbbbbbeeebbeebeebbeebe:    
Contact         :ggg      e               ff e  efg   g g          g g g    e f  gg   g gg                           
Contact         :                         g                                             h                            

queryA       108:IQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI: 169
                :  *      *      *** **   * * *  *       *     ****    **  **   :
7u05_K_1     113:ENAD----DNVAVGLIGNKSDLAHLRAVPTDEAKNFAM-ENQMLFTETSALNSDNVDKAFREL: 170
SecStr          :HHS ----TT EEEEEEE  S  TT  S HHHHHHHHH-HTT EEEE  STTTTHHHHHHHHH:    
ExpBur          :eebe----eebbbbbbbbebeeeeeeebeeeebeebbe-eeebebbbbbeeeeeebeebbeeb:    
Contact         :           n          nnnn  nn n n   n   nnnnn     n  n  n   n

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