Protein Model on 7opq assembly_id=1
(TEMPLATE: 
7opq
assembly_id:1
)Protein Model on 7opq assembly_id=1
(TEMPLATE: 7opq
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RAB7A_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [212 aa] | Synaptotagmin-like protein 2,Ras-related protein Rab-27A :SYTL2_HUMAN:RB27A_HUMAN | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [204 aa] | Synaptotagmin-like protein 2,Ras-related protein Rab-27A :SYTL2_HUMAN:RB27A_HUMAN | 68E 69R 71Q(R) 72S 75V(T) 76A 77F 79R 80G(D) 105E(Q) 107L(Q) 108I(M) 109Q(H) 110A 111S(Y) 112P(S) 113R(E) (identity: 41.2 %/40.9 %) | |
| 3 | c | C 1 (A) | non-polymer(06D) | 1-[(2~{S})-2-(4-methoxyphenyl)pyrrolidin-1-yl]propan-1-one | 10K 81A 82D(M) 111S(Y) (identity: 50.0 %/40.9 %) | |
| 4 | d | D 1 (A) | non-polymer(GNP) | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | 17S 18G 19V 20G 21K 22T 23S 33F 34S(N) 35N(S) 36Q(K) 37Y(F) 39A(T) 40T 65A 66G 125N 126K 128D 129L 155S 156A 157K(A) (identity: 73.9 %/40.9 %) | |
| 5 | e | E 1 (A) | non-polymer(MG) | MAGNESIUM ION | 22T 40T 63D (identity: 100.0 %/40.9 %) | |
| 6 | f | F 1 (A) | non-polymer(GOL) | GLYCEROL | 127I(S) 128D 155S 158E(N) 160I(T) (identity: 40.0 %/40.9 %) | |
| 7 | g | G 1 (A) | non-polymer(GOL) | GLYCEROL | 128D 129L 130E 131N(D) 132R(Q) (identity: 60.0 %/40.9 %) | |
| 8 | h | H 1 (A) | non-polymer(GOL) | GLYCEROL | 16D 71Q(R) 98T(N) 101S(N) 102W 105E(Q) (identity: 33.3 %/40.9 %) | |
| 9 | i | I 1 (A) | non-polymer(GOL) | GLYCEROL | 22T 23S 26N(Y) 34S(N) 36Q(K) 37Y(F) 38K(I) (identity: 28.6 %/40.9 %) | |
| 10 | j | J 1 (A) | non-polymer(GOL) | GLYCEROL | 72S (identity: 100.0 %/40.9 %) | |
| 11 | k | K 1 (A) | non-polymer(GOL) | GLYCEROL | 107L(Q) 113R(E) 114D(N) 115P 120F(I) 147N(Y) (identity: 16.7 %/40.9 %) | |
| 12 | l | L 1 (B) | non-polymer(06D) | 1-[(2~{S})-2-(4-methoxyphenyl)pyrrolidin-1-yl]propan-1-one | ||
| 13 | m | M 1 (B) | non-polymer(GNP) | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | ||
| 14 | n | N 1 (B) | non-polymer(MG) | MAGNESIUM ION | ||
| 15 | o | O 1 (B) | non-polymer(GOL) | GLYCEROL | ||
| 16 | p | P 1 (B) | non-polymer(GOL) | GLYCEROL | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7opq_A_1 identity=40.9% |
queryA 8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD----------DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK: 97
:* * ********** ** ** * * ** * * * ***** *** ** ** * * * ** * * :
7opq_A_1 46:LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFL: 145
SecStr :EEEEEEE STTSSHHHHHHHHHH S SEEEEEEEEEE B SSS B EEEEEEEEEE SGGGHHHHHTTGGG SEEEEEEETT HHHHH:
ExpBur :bbbbbbbbbeebbbeebbebbbeeeeeeeeeebebbebeeeebebeeeeeeeeeeeebebbbbbbbbbbeeebeeebbebbeebebbbbbbbbeeeebbe:
Contact : c hddddddd i dddddidd e dd bb bb bbb bbcc
Contact : ei i ii e hj
Contact : i
queryA 98:TLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI: 169
: * * * * *** *** * * ******** * ** :
7opq_A_1 146:NVRNWISQLQMHAYSENPD---IVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEML: 214
SecStr :THHHHHHHHHHHSSSSS ---EEEEEE TT GGG S HHHHHHHHHHHT EEE TTT TTHHHHHHHH:
ExpBur :ebbebbeebeeebeeeebb---bbbbbbeeeeeeeeebeeeebeebbeeeebebbbbbbeeeeebeebbeeb:
Contact :h hh b bbbbbbbkk k ddfddggg k dddf f
Contact : h k c k fg f
Contact : g
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