Protein Model on 7kmt assembly_id=1
(TEMPLATE: 
7kmt
assembly_id:1
)Protein Model on 7kmt assembly_id=1
(TEMPLATE: 7kmt
assembly_id:1
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | h(query A) |
| 1 | a | A 1 (H) | polymer(polypeptide(L)) [169 aa] | Trafficking protein particle complex subunit 23 :TRS23_YEAST | 8L 9L(F) 10K 37Y 41I 45F 47T(I) 60Q 62W 71Q(R) 72S(T) 76A(S) 77F(Y) 79R 80G 82D(H) (identity: 56.2 %/37.5 %) | |
| 2 | b | B 1 (J) | polymer(polypeptide(L)) [191 aa] | Trafficking protein particle complex subunit 31 :TRS31_YEAST | ||
| 3 | c | C 1 (G) | polymer(polypeptide(L)) [156 aa] | Trafficking protein particle complex subunit BET5 :BET5_YEAST | 37Y 40T 41I 71Q(R) (identity: 75.0 %/37.5 %) | |
| 4 | d | D 1 (I) | polymer(polypeptide(L)) [182 aa] | Trafficking protein particle complex subunit BET3 :BET3_YEAST | 76A(S) 79R (identity: 50.0 %/37.5 %) | |
| 5 | e | E 1 (F) | polymer(polypeptide(L)) [182 aa] | Trafficking protein particle complex subunit BET3 :BET3_YEAST | 36Q(D) 39A(S) (identity: 0.0 %/37.5 %) | |
| 6 | f | F 1 (E) | polymer(polypeptide(L)) [178 aa] | Trafficking protein particle complex subunit 33 :TRS33_YEAST | ||
| 7 | g | G 1 (K) | polymer(polypeptide(L)) [131 aa] | Trafficking protein particle complex subunit 20 :TRS20_YEAST | ||
| 8 | h | A(RAB7A_HUMAN) | H 1 (A) | polymer(polypeptide(L)) [174 aa] | GTP-binding protein YPT1 :YPT1_YEAST | |
| 9 | i | I 1 (B) | polymer(polypeptide(L)) [475 aa] | Trafficking protein particle complex III-specific subunit 85 :TRS85_YEAST | ||
| 10 | j | J 1 (I) | non-polymer(PLM) | PALMITIC ACID | ||
| 11 | k | K 1 (F) | non-polymer(PLM) | PALMITIC ACID | ||
| ALIGNMENTS |
| MODEL[8] Protein A "queryA" TEMPLATE:7kmt_H_1 identity=37.5% |
queryA 8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
:* * * ***** * * *** ** * * * * *********** *** * *** * * * :
7kmt_H_1 8:LFKLLLIGNSGVGKSCLLLRFSDDTXXXDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTXQESFNGVKMWLQEID: 107
SecStr :EEEEEEEE TTS HHHHHHHHS --- TTTSS EEEEEEEEETTEEEEEEEEEE STTHHHHHHHSSTT SEEEEEEE - HHHHHHHHHHHHHH:
ExpBur :ebbbbbbbeeebebeebbeebbeee---eeeeeebbbebeeebebeeeebebebbbbebeebeeebbeeebeebebbbbbbbbe-eebbebbeebbeebe:
Contact :aaa ea eca a a a a aa aa aa a
Contact : c c c d d
queryA 108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
: * *** * * * * **** *** ** * **:
7kmt_H_1 108:RYATSTVLK----LLVGNKCDXXXXRVVEYDVAKEFADANKMPFLETSAXXSTNVEDAFLTMAR: 167
SecStr :HHS TTSEE----EEEEE ---- S SHHHHHHHHHTT EEE -- SHHHHHHHHHH:
ExpBur :eebeeebee----bbbbbeee----eebeeeebeebbeeeebebeebee--ebebeebbeebbe:
|
[help]