Protein Model on 5ytb assembly_id=1
(TEMPLATE: 
5ytb
assembly_id:1
)Protein Model on 5ytb assembly_id=1
(TEMPLATE: 5ytb
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RAB7A_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [209 aa] | GTP-binding nuclear protein Ran :RAN_HUMAN | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [121 aa] | Ran-specific GTPase-activating protein 1 :YRB1_YEAST | 27Q(R) 30N(T) 31K(G) 32K(E) 48K(L) 49E(V) 50V(F) 162V(F) 163E (identity: 11.1 %/34.0 %) | |
| 3 | c | C 1 (C) | polymer(polypeptide(L)) [1017 aa] | Exportin-1,Exportin-1 :XPO1_YEAST:XPO1_YEAST | 42G 43A(V) 45F(V) 62W 68E 69R(K) 72S(G) 73L 74G(R) 75V(D) 76A(G) 77F(Y) 79R(I) 80G(Q) 94N(V) 101S(N) 104D(R) 113R 114D(V) 116E 136T(A) 137K 144Y(H) 145S(R) 146K 148N 150P(Q) 151Y 153E(D) 160I(Y) 172N(K) (identity: 32.3 %/34.0 %) | |
| 4 | d | D 1 (A) | non-polymer(GTP) | GUANOSINE-5'-TRIPHOSPHATE | 16D 17S(G) 18G 19V(T) 20G 21K 22T 23S(T) 33F 34S(E) 35N(K) 36Q(K) 37Y 38K(V) 39A 40T 64T 65A 66G 67Q 125N 126K 128D 129L(I) 155S 156A 157K (identity: 70.4 %/34.0 %) | |
| 5 | e | E 1 (A) | non-polymer(MG) | MAGNESIUM ION | 22T 40T (identity: 100.0 %/34.0 %) | |
| 6 | f | F 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | 101S(N) 102W 105E(D) (identity: 33.3 %/34.0 %) | |
| 7 | g | G 1 (A) | non-polymer(CL) | CHLORIDE ION | 91T 92A(S) 93P(R) 133Q(K) (identity: 25.0 %/34.0 %) | |
| 8 | h | H 1 (A) | non-polymer(CL) | CHLORIDE ION | 127I(V) (identity: 0.0 %/34.0 %) | |
| 9 | i | I 1 (C) | non-polymer(GOL) | GLYCEROL | ||
| 10 | j | J 1 (C) | non-polymer(CL) | CHLORIDE ION | ||
| 11 | k | K 1 (C) | non-polymer(CL) | CHLORIDE ION | ||
| 12 | l | L 1 (C) | non-polymer(CL) | CHLORIDE ION | ||
| 13 | m | M 1 (C) | non-polymer(CL) | CHLORIDE ION | ||
| 14 | n | N 1 (C) | non-polymer(CL) | CHLORIDE ION | ||
| 15 | o | O 1 (C) | non-polymer(ACT) | ACETATE ION | ||
| 16 | p | P 1 (C) | non-polymer(ACT) | ACETATE ION | ||
| 17 | q | Q 1 (C) | non-polymer(GOL) | GLYCEROL | ||
| 18 | r | R 1 (C) | non-polymer(GOL) | GLYCEROL | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5ytb_A_1 identity=34.0% |
queryA 6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE: 105
: * * ** * *** * * ** * ******* * * * * * **** * * * :
5ytb_A_1 8:QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD: 107
SecStr : EEEEEEEE TTSSHHHHHHHHHHS S SEEEEEEEEEETTEEEEEEEEEE SGGG TTGGGGGTT SEEEEEEETT HHHHHTHHHHHHH:
ExpBur :eeebbbbbbbbeebbbbbbbebbeeeeebeeeebbebeeeeebebebeeeebebbbebbbbeeeebeeeeebbeebebbbbbbbbeeeebbeebeebbee:
Contact : dddddddd b bbbdddddddd cc c bbb c ddddcc cccccc cc gggc cf cf
Contact : e e f
queryA 106:FLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL: 174
: * ** * * *** * * * * * * * *** * * * ** :
5ytb_A_1 108:LV-----RVCENIPIVLCGNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI: 169
SecStr :HH-----HH TT EEEEEE TTSSS SS GGG --THHHHT EEEE TTT TTTTHHHHHHHHHHH:
ExpBur :be-----eebeebbbbbbbbebeeeebebeeeebe--ebeeeebebbebbbeeeebeeebbbbbbeeee:
Contact : cc c ddhdd g cc ccc c cc c ddd c bb c
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