Protein Model on 5szj assembly_id=1 (TEMPLATE: 5szj assembly_id:1 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [175 aa] Ras-related protein Rab-10 :RAB10_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [145 aa] MICAL C-terminal-like protein :MICLK_HUMAN 8L 10K 30N(D) 38K(I) 39A(S) 41I 43A(I) 44D 45F 58T(K) 60Q 62W 70F 73L(I) (identity: 57.1 %/38.0 %)
3 c C 1 (A) non-polymer(GNP) PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER 17S 18G 19V 20G 21K 22T 23S(C) 33F 34S(N) 35N(T) 37Y(F) 39A(S) 40T 64T 65A 66G 125N 126K 128D 129L(M) 155S 156A 157K (identity: 73.9 %/38.0 %)
4 d D 1 (A) non-polymer(MG) MAGNESIUM ION 22T 40T 63D (identity: 100.0 %/38.0 %)
5 e E 1 (B) non-polymer(PEG) DI(HYDROXYETHYL)ETHER 46L(K) (identity: 0.0 %/38.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5szj_A_1 identity=38.0%
queryA         7:VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF: 106
                : * *    ********          *      *** **  * *         ***********       ****    ** * *    *     *    :
5szj_A_1      10:LLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKW----: 105
SecStr          :EEEEEEEE STTS HHHHHHHHHHS    S     SEEEEEEEEEETTEEEEEEEEEE  STTSHHHHGGGTTT SEEEEEEETT HHHHHTHHHH----:    
ExpBur          :eebebbbbbbeebbbeebbebbeeeeeeeeeeebebbeeeeeebebeebebebbbebbbbeeebeeebeeebeebebbbbbbbbeeeebbebbeeb----:    
Contact         : b b      ccccccc      b  ccc cbbcb bbbe           b b bdccc   b  b                                 
Contact         :               d                cd                                                                  

queryA       107:LIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ: 176
                :*        *      **** *     *  *           *  ******  ** * ** * *   *  :
5szj_A_1     106:LRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRK: 175
SecStr          :HHHHHHHS TT EEEEEEE TT GGG  S HHHHHHHHHHTT EEEE BTTTTBSSHHHHHHHHHHHHHT:    
ExpBur          :beebeeebeeebeebbbbbebeeeeeeebeeeebeebbeeeebebbbbbbeeeeebeebbbbbbebbbee:    
Contact         :                  cc cc                         ccc                                                 


Input Residue Numbers for Focused Sites

ex) 2,15,123