Protein Model on 5lef assembly_id=1
(TEMPLATE: 
5lef
assembly_id:1
)Protein Model on 5lef assembly_id=1
(TEMPLATE: 5lef
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RAB7A_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [166 aa] | Ras-related protein Rab-6A :RAB6A_HUMAN | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [159 aa] | Ras-related protein Rab-6A :RAB6A_HUMAN | ||
| 3 | c | C 1 (C) | polymer(polypeptide(L)) [49 aa] | Kinesin-like protein KIF20A :KI20A_MOUSE | 41I 43A(I) 44D 45F 60Q 62W 77F(Y) (identity: 71.4 %/39.5 %) | |
| 4 | d | D 1 (D) | polymer(polypeptide(L)) [47 aa] | Kinesin-like protein KIF20A :KI20A_MOUSE | 41I 43A(I) 69R 70F 73L 76A(S) 77F(Y) 79R 80G(D) (identity: 55.6 %/39.5 %) | |
| 5 | e | E 1 (A) | non-polymer(GTP) | GUANOSINE-5'-TRIPHOSPHATE | 17S(Q) 18G(S) 19V 20G 21K 22T 23S 33F 34S(D) 35N 37Y 39A 40T 65A 66G 125N 126K 128D 129L 155S 156A 157K (identity: 86.4 %/39.5 %) | |
| 6 | f | F 1 (A) | non-polymer(MG) | MAGNESIUM ION | 22T 40T 63D (identity: 100.0 %/39.5 %) | |
| 7 | g | G 1 (A) | non-polymer(SO4) | SULFATE ION | 27Q(R) 31K(D) (identity: 0.0 %/39.5 %) | |
| 8 | h | H 1 (A) | non-polymer(GOL) | GLYCEROL | 140Q(E) 151Y(F) 152F(I) 168T(R) (identity: 0.0 %/39.5 %) | |
| 9 | i | I 1 (B) | non-polymer(GTP) | GUANOSINE-5'-TRIPHOSPHATE | ||
| 10 | j | J 1 (B) | non-polymer(MG) | MAGNESIUM ION | ||
| 11 | k | K 1 (B) | non-polymer(SO4) | SULFATE ION | ||
| 12 | l | L 1 (B) | non-polymer(SO4) | SULFATE ION | ||
| 13 | m | M 1 (B) | non-polymer(IPA) | ISOPROPYL ALCOHOL | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5lef_A_1 identity=39.5% |
queryA 9:LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI: 108
: * ** ****** * * * **** *** * ** * * ***** *** ** * * * * * * * * * :
5lef_A_1 10:FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT: 109
SecStr :EEEEEE STTSSHHHHHHHHHHS S SEEEEEEEEE SS EEEEEEEEE SGGGGGGHHHHHHT SEEEEEEETT HHHHHTHHHHHHHHHH:
ExpBur :bbbbbbbbeebbbeebbeebbeeeeeeeeebbebbeeeeebbeeeeeebebebbbbbbeeebeeebeeebeebbbbbbbbbbbeeebbeebeebbeebee:
Contact : eeeeeee g g eee e eec ccc c cf ee dd d dc dd
Contact : f fd d d
queryA 109:QASPRDPENFPFVVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA: 170
: *** ** *** * ***** ** * * *:
5lef_A_1 110:ERGS----DVIIMLVGNKTDLADKRQVSIEEGERKA-KELNVMFIETSAKAGYNVKQLFRRVA: 167
SecStr :HHTT----SSEEEEEEE TT GGG S HHHHHHHH-HHTT EEEEEBTTTTBSHHHHHHHHH:
ExpBur :eeee----ebebbbbbbbbeeeeeeebeeeebeebb-eeeebebbbbbbeeeebbeebbeebb:
Contact : ee ee h hh eee h
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