Protein Model on 4ojk assembly_id=1
(TEMPLATE: 
4ojk
assembly_id:1
)Protein Model on 4ojk assembly_id=1
(TEMPLATE: 4ojk
assembly_id:1
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RAB7A_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [174 aa] | Ras-related protein Rab-11B :RB11B_HUMAN | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [37 aa] | cGMP-dependent protein kinase 2 :KGP2_RAT | 8L 9L(F) 10K 45F 55R(K) 60Q 62W 70F(Y) 73L(I) 76A 79R 80G 82D(V) (identity: 61.5 %/42.0 %) | |
| 3 | c | E 1 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 16D 17S 18G 19V 20G 21K 22T(S) 23S(N) 33F 34S(N) 35N(L) 36Q(E) 38K 125N 126K 128D 129L 155S 156A 157K(L) (identity: 70.0 %/42.0 %) | |
| 4 | d | B 2 (B) | polymer(polypeptide(L)) [160 aa] | Ras-related protein Rab-11B :RB11B_HUMAN | ||
| 5 | e | D 2 (D) | polymer(polypeptide(L)) [33 aa] | cGMP-dependent protein kinase 2 :KGP2_RAT | 41I 42G 44D(E) (identity: 66.7 %/42.0 %) | |
| 6 | f | F 2 (B) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4ojk_A_1 identity=42.0% |
queryA 8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
:* ** ******* * * * *** * * ** ********** * **** ** * * * * :
4ojk_A_1 6:LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR: 105
SecStr :EEEEEEESSTTSSHHHHHHHHHHS SS SS EEEEEEEETTEEEEEEEEE TTTTTSGGGHHHHHTTEEEEEEEEETT HHHHHTHHHHHHHHH:
ExpBur :ebbbbbbbbeebbbebbbbbbbeeeeeeeeeeeeeeeebeeebebeeebbebebbbbebbeeeeeebeebbeebebbbbbbbbeeeebbeebeebbebbe:
Contact :bbb cccccccc cccc c ee eb b b b b b b bb b
queryA 108:IQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI: 169
: * * *** ** * * * * * *** **** *** ** *:
4ojk_A_1 106:DHADS----NIVIMLVGNKSDLRHLRAVPTDEARAFA-EKNNLSFIETSALDSTNVEEAFKNI: 163
SecStr :HHS T----T EEEEEEE GGGGGG S HHHHHHHH-HHTT EEEE BTTTTBSHHHHHHHH:
ExpBur :eebee----ebbbbbbbbebeeeeeeebeeeebeebb-eeeebeebbbbbeeeeebeebbeeb:
Contact : cc cc ccc
|
[help]