Protein Model on 4li0 assembly_id=1 (TEMPLATE: 4li0 assembly_id:1 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [171 aa] Ras-related protein Rab-8A :RAB8A_HUMAN
2 b E 1 (E) polymer(polypeptide(L)) [64 aa] Guanine nucleotide exchange factor for Rab-3A :R3GEF_HUMAN 10K 37Y(F) 43A(I) 44D 45F 46L(K) 47T(I) 60Q 62W 73L(I) 75V(T) 76A 77F(Y) 79R (identity: 50.0 %/41.9 %)
3 c F 1 (F) polymer(polypeptide(L)) [69 aa] Guanine nucleotide exchange factor for Rab-3A :R3GEF_HUMAN 40T 41I 69R 70F 71Q(R) 72S(T) 73L(I) (identity: 57.1 %/41.9 %)
4 d G 1 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE 16D 18G 19V 20G 21K 22T 23S(C) 125N 126K 128D 129L(V) 155S 156A 157K (identity: 85.7 %/41.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4li0_A_1 identity=41.9%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *    ********          *      *** **       *      ***********     * ****    ** * *    *     *     :
4li0_A_1      10:LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE: 109
SecStr          :EEEEEEEE TTSSHHHHHHHHTT S    STTTTSEEEEEEEEEETTEEEEEEEEEE   GGGHHHHHHHHHH SEEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebebbbbbeeebbbbebbbebbeeeeeeeebeeebbbeeeeebebeeebbebebebbeeeeeebeebbebbeebebbbbbbbbeeeebbeebeebbeebe:    
Contact         :  b     d dddddd             b  cc bbbbb            b b      ccccb bbb b                            
Contact         :                                                                 c                                  

queryA       108:IQASPRDPENFPFVVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN: 172
                :  **  * *      **** *    ***   *          *   *****  **** ** * ** :
4li0_A_1     110:EHASA-DVEK---MILGNKCDVNDKRQVSKERGEKLALDY-GIKFMETSAKANINVENAFFTLARD: 170
SecStr          :HHS T-T EE---EEEEE TT  TT  S HHHHHHHHHHH-T EEEE BTTTTBSHHHHHHHHHHH:    
ExpBur          :eebee-ebee---bbbbbebebeeeeebeeeebeebbeee-ebebbbbbbeeeeebeebbbbbbee:    
Contact         :                 dd dd                          ddd                                                 


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