Protein Model on 4kyi assembly_id=1
(TEMPLATE: 
4kyi
assembly_id:1
)Protein Model on 4kyi assembly_id=1
(TEMPLATE: 4kyi
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [530 aa] | VipD :Q5ZRP9_LEGPH | 41I 42G 43A 44D(A) 45F 60Q(E) 62W 69R 70F(Y) 72S 73L 76A(M) 79R (identity: 69.2 %/44.3 %) | |
| 2 | b | A(RAB7A_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [164 aa] | Ras-related protein Rab-5C :RAB5C_HUMAN | |
| 3 | c | I 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | ||
| 4 | d | J 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | ||
| 5 | e | K 1 (A) | non-polymer(GOL) | GLYCEROL | ||
| 6 | f | L 1 (A) | non-polymer(GOL) | GLYCEROL | ||
| 7 | g | M 1 (B) | non-polymer(GNP) | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | 16D(E) 17S 18G(A) 19V 20G 21K 22T(S) 23S 33F 34S(H) 35N(E) 38K(E) 39A(S) 40T 64T 66G 67Q(L) 125N 126K 128D 129L 155S 156A 157K (identity: 66.7 %/44.3 %) | |
| 8 | h | N 1 (B) | non-polymer(EDO) | 1,2-ETHANEDIOL | 22T(S) 25M(V) 40T 44D(A) 46L 63D (identity: 50.0 %/44.3 %) | |
| 9 | i | O 1 (B) | non-polymer(EDO) | 1,2-ETHANEDIOL | 10K 62W 76A(M) 77F(Y) (identity: 50.0 %/44.3 %) | |
| 10 | j | P 1 (B) | non-polymer(MG) | MAGNESIUM ION | 22T(S) 40T 63D 64T (identity: 75.0 %/44.3 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:4kyi_B_1 identity=44.3% |
queryA 9:LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI: 108
: * ** * *** ** * * **** *** * ** * ****** ** ** **** * * * ** * * :
4kyi_B_1 10:FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR: 109
SecStr :EEEEEE TTSSHHHHHHHHHT TT SEEEEEEEEEETTEEEEEEEEEE SGGGGGGHHHHHSS SEEEEEEETT HHHHHHHHHHHHHHHH:
ExpBur :bbbbbbbeeebbbebbbbebeeeeeeeeeeebeeeeeeeeebebeeeebbbebebbbbeeeeeeebeebbeebebbbbbbbbeeeebbebbeebbeebee:
Contact : i gggggggg h ggg gggaaaaah a ahg gg aa aa ai a
Contact : h h h ijj i
Contact : j j
queryA 109:QASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
:**** * *** ** * * *** * ***** * ** * ** :
4kyi_B_1 110:QASP----NIVIALAGNKADLASKRAVEFQEAQAYA-DDNSLLFMETSAKTAMNVNEIFMAIAK: 168
SecStr :HS T----T EEEEEEE TT GGG S HHHHHHHH-HHTT EEEE BTTTTBTHHHHHHHHHH:
ExpBur :ebee----ebbbbbbbbebeeeeeeebeeeebeebb-eeeebbbebbbbeeeeebeebbebbbe:
Contact : gg gg ggg
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