Protein Model on 4iru assembly_id=1
(TEMPLATE: 
4iru
assembly_id:1
)Protein Model on 4iru assembly_id=1
(TEMPLATE: 4iru
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [296 aa] | LepB :Q5ZSM7_LEGPH | 10K 17S 18G 35N(E) 36Q(S) 37Y 38K(I) 39A(S) 40T 41I 42G 43A(V) 44D 45F 47T(I) 60Q 62W 67Q 68E 69R 70F 73L(I) 77F(Y) 79R 126K (identity: 68.0 %/40.3 %) | |
| 2 | b | A(RAB7A_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [170 aa] | Ras-related protein Rab-1A :RAB1A_HUMAN | |
| 3 | c | G 1 (A) | non-polymer(ACT) | ACETATE ION | ||
| 4 | d | H 1 (A) | non-polymer(ACT) | ACETATE ION | ||
| 5 | e | I 1 (A) | non-polymer(GOL) | GLYCEROL | ||
| 6 | f | J 1 (A) | non-polymer(GOL) | GLYCEROL | ||
| 7 | g | K 1 (A) | non-polymer(GOL) | GLYCEROL | ||
| 8 | h | L 1 (A) | non-polymer(GOL) | GLYCEROL | 89D 91T (identity: 100.0 %/40.3 %) | |
| 9 | i | M 1 (A) | non-polymer(GOL) | GLYCEROL | 37Y (identity: 100.0 %/40.3 %) | |
| 10 | j | N 1 (A) | non-polymer(GOL) | GLYCEROL | ||
| 11 | k | O 1 (A) | non-polymer(K) | POTASSIUM ION | ||
| 12 | l | P 1 (A) | non-polymer(K) | POTASSIUM ION | ||
| 13 | m | Q 1 (A) | non-polymer(K) | POTASSIUM ION | ||
| 14 | n | R 1 (A) | non-polymer(K) | POTASSIUM ION | ||
| 15 | o | S 1 (B) | non-polymer(MG) | MAGNESIUM ION | 22T(S) 40T (identity: 50.0 %/40.3 %) | |
| 16 | p | T 1 (B) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 16D 17S 18G 19V 20G 21K 22T(S) 23S(C) 33F(Y) 35N(E) 36Q(S) 37Y 38K(I) 125N 126K 128D 129L 155S 156A 157K (identity: 70.0 %/40.3 %) | |
| 17 | q | U 1 (B) | non-polymer(AF3) | ALUMINUM FLUORIDE | 16D 17S 18G 21K 39A(S) 40T 64T 65A 66G 67Q (identity: 90.0 %/40.3 %) | |
| 18 | r | V 1 (B) | non-polymer(ACT) | ACETATE ION | 76A(S) 77F(Y) 79R (identity: 33.3 %/40.3 %) | |
| 19 | s | W 1 (B) | non-polymer(ACT) | ACETATE ION | 16D 71Q(R) 101S(Q) 102W (identity: 50.0 %/40.3 %) | |
| 20 | t | X 1 (B) | non-polymer(GOL) | GLYCEROL | 10K 60Q 62W 77F(Y) 79R 80G (identity: 83.3 %/40.3 %) | |
| 21 | u | Y 1 (B) | non-polymer(K) | POTASSIUM ION | 35N(E) 157K (identity: 50.0 %/40.3 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:4iru_B_1 identity=40.3% |
queryA 8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
:* * ******* * * *** ** * *********** **** * *** * * * :
4iru_B_1 18:LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID: 117
SecStr :EEEEEEEESTTSSHHHHHHHHHHS S SEEEEEEEEEETTEEEEEEEEEE SGGGHHHHHHTSTT SEEEEEEETT HHHHHHHHHHHHHHH:
ExpBur :ebebbbbbeeebbbeebbebbbeeeeeeeeeebebeeeeeeebebeeeebebebbbbbbbeebbeebbeebeebebbbbbbbbeeeebbeebeebbebbe:
Contact : a paapppop p aaaaaaaaaaa a a a qqqaaaas a ra at h h ss
Contact : t qpp qp ppipqo t t q r r
Contact : sqq u p q t t
queryA 108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA: 170
: ** ** *** ** * ** ***** * **** * * *:
4iru_B_1 118:RYAS----ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFUTUA: 176
SecStr :HHS ----TT B EEEE TT TTT S HHHHHHHHHHTT EEE TTT TTHHHHHHHHH:
ExpBur :eebe----eebbebbbbbebeeeeeeebeeeebeeebeeeebebbbbbbeeeeebeebbeebb:
Contact : pa pp ppp
Contact : p u
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