Protein Model on 3dz8 assembly_id=1
(TEMPLATE: 
3dz8
assembly_id:1
)Protein Model on 3dz8 assembly_id=1
(TEMPLATE: 3dz8
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RAB7A_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [178 aa] | Ras-related protein Rab-3B :RAB3B_HUMAN | |
| 2 | b | A 2 (A) | polymer(polypeptide(L)) [178 aa] | Ras-related protein Rab-3B :RAB3B_HUMAN | 26N(F) 30N(D) 33F 34S(T) 35N(P) 36Q(A) 37Y(F) 38K(V) 39A(S) 40T 41I(V) 42G 43A(I) 51M(Y) 53D(H) 58T(K) 72S(T) 73L(I) (identity: 16.7 %/36.1 %) | |
| 3 | c | B 1 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 16D(N) 17S 18G(S) 19V 20G 21K 22T 23S 125N 126K 128D 129L(M) 155S 156A 157K (identity: 80.0 %/36.1 %) | |
| 4 | d | B 2 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | ||
| 5 | e | C 1 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | 17S 63D 64T 65A (identity: 100.0 %/36.1 %) | |
| 6 | f | C 2 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | ||
| 7 | g | D 1 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | 29V(A) 30N(D) 34S(T) (identity: 0.0 %/36.1 %) | |
| 8 | h | D 2 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | ||
| 9 | i | E 1 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | ||
| 10 | j | E 2 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | 72S(T) (identity: 0.0 %/36.1 %) | |
| 11 | k | F 1 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | 32K(T) 52V(R) 163E(R) (identity: 0.0 %/36.1 %) | |
| 12 | l | F 2 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | ||
| 13 | m | G 1 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | 159A(N) 163E(R) (identity: 0.0 %/36.1 %) | |
| 14 | n | G 2 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | ||
| 15 | o | H 1 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | 52V(R) 53D(H) (identity: 0.0 %/36.1 %) | |
| 16 | p | H 2 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3dz8_A_1 identity=36.1% |
queryA 8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
: * * * * ***** * * * * ** * * * ********** * **** * * * * * :
3dz8_A_1 23:MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----A: 118
SecStr : EEEEEEESTTSSHHHHHHHHHHHTT EEEEETTTEEEEEEEETTTTEEEEEE HHHHHH HHHHHHHHTT EEEEEEETT HHHHHTHHHH----H:
ExpBur :bebbbbbbeeebbbeebbeebbeebebeeeeeebeeebebbbbebeeeebbbbbbbbebbeebeeebeebbeebbbbbbbbbbeeeebbebbeeb----b:
Contact : cccccccc b gb kbbbbbbbbbbb bkb b eee bb
Contact : e g g oo j
queryA 108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI: 169
: * * *** * * * ** **** * * *** :
3dz8_A_1 119:TQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL: 180
SecStr :HHHHHHS TT EEEEEEE TT GGG S HHHHHHHHHHHT EEEE BTTTTBSHHHHHHHH:
ExpBur :eebeebbeebbebbbbbbebeeeeeeebeeeebeebbeeeebebbbbbbeeeeebeebbebb:
Contact : cc cc ccc m k
Contact : m
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