Protein Model on 2il1 assembly_id=1
(TEMPLATE: 
2il1
assembly_id:1
)Protein Model on 2il1 assembly_id=1
(TEMPLATE: 2il1
assembly_id:1
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RAB7A_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [163 aa] | Rab12 :RAB43_HUMAN | |
| 2 | b | B 1 (A) | non-polymer(MG) | MAGNESIUM ION | 22T (identity: 100.0 %/37.2 %) | |
| 3 | c | C 1 (A) | non-polymer(CA) | CALCIUM ION | 163E(D) 164Q(E) (identity: 0.0 %/37.2 %) | |
| 4 | d | D 1 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 16D(S) 17S(R) 18G 19V 20G 21K 22T 23S 125N 126K 128D 129L(C) 155S 156A 157K (identity: 80.0 %/37.2 %) | |
| 5 | e | E 1 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | 152F(C) 161N 164Q(E) (identity: 33.3 %/37.2 %) | |
| 6 | f | F 1 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | 145S(Q) (identity: 0.0 %/37.2 %) | |
| 7 | g | G 1 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | 128D 158E(D) (identity: 50.0 %/37.2 %) | |
| 8 | h | H 1 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | 129L(C) (identity: 0.0 %/37.2 %) | |
| 9 | i | I 1 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | 104D(K) 107L(D) (identity: 0.0 %/37.2 %) | |
| 10 | j | J 1 (A) | non-polymer(UNX) | UNKNOWN ATOM OR ION | 128D 129L(C) 130E (identity: 66.7 %/37.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:2il1_A_1 identity=37.2% |
queryA 9:LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI: 108
:* *** * ******** * * ** * * *********** * * ** * ** * * ** * * :
2il1_A_1 27:LQVIIIGSRGVGKTSLMERFTDXXXXXXXXSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDK: 126
SecStr :EEEEEE STTSSHHHHHHHH -------- TTEEEEEEEEEETTEEEEEEEEEE SGGGHHHHHHHHHH SEEEEEEETT HHHHHTHHHHHHHHHH:
ExpBur :bebbbbbbeebbbeebbeebbe--------eeeebeeeeeebebeebebebbbbbbbbeeeebeebbeebeebebbbbbbbbbeeebbeebeebbebbee:
Contact : ddddddbd i i
Contact : d
queryA 109:QASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ: 176
: ** * *** * * * * *** ** * ** :
2il1_A_1 127:YAS----EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK: 191
SecStr :HS ----TT EEEEEEE GGGGGG S HHHHHHHHHTSTT EEEE BTTTTBSHHHHHHHHHHHHHHT:
ExpBur :ebe----eebebbbbbbeeeeeeeeebeeeebeebbeeeeebebbbbbbeeeeebeebbeebbbbbbee:
Contact : dd ddjj f e dddg e cc
Contact : gh e
Contact : jj
|
[help]