Protein Model on 1vg9 assembly_id=1 (TEMPLATE: 1vg9 assembly_id:1 )

CurrentView:JAVA Change to:[HTML5] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description b(query A)
1 a A 1 (A) polymer(polypeptide(L)) [501 aa] Rab proteins geranylgeranyltransferase component A 1 :RAE1_RAT 17S 42G 44D 45F 62W 63D 65A 67Q 69R 70F 71Q 72S 74G 75V 76A 77F 79R 108I 111S (identity: 100.0 %/97.1 %)
2 b A(RAB7A_HUMAN) B 1 (B) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-7 :RAB7_RAT
3 c I 1 (B) non-polymer(MG) MAGNESIUM ION 22T 63D (identity: 100.0 %/97.1 %)
4 d J 1 (B) non-polymer(K) POTASSIUM ION 71Q (identity: 100.0 %/97.1 %)
5 e K 1 (B) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE 16D 17S 18G 19V 20G 21K 22T 23S 33F 34S 35N 125N 126K 128D 129L 155S 156A 157K (identity: 100.0 %/97.1 %)
6 f L 1 (B) non-polymer(P33) 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL 71Q 98T 101S 102W 105E (identity: 100.0 %/97.1 %)
ALIGNMENTS
MODEL[2] Protein A "queryA" TEMPLATE:1vg9_B_1 identity=97.1%
queryA         6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE: 105
                :******************************     *****************************************************************:
1vg9_B_1       6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNXXXXXIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE: 105
SecStr          :  EEEEEEE  TTSSHHHHHHHHHH     -----    EEEEEEEETTEEEEEEEE  TTTTTTT   HHHHTT SEEEEEEETT HHHHHTHHHHHHH:    
ExpBur          :ebebbbbbbbbeebbbeebbebbbeeeeee-----eeeeeeeeebebeeeebbbebebbeeebeeeebeeebbeebbbbbbbbbbeeeebbebbeebbee:    
Contact         :          eaeeeece         eee      a aa                aa a a aaaa aaaa a                  f  ff  f
Contact         :           e    e                                        c       d                                  
Contact         :                                                                 f                                  

queryA       106:FLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE: 179
                :**************************************************************************:
1vg9_B_1     106:FLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE: 179
SecStr          :HHHHH  SSGGG  EEEEEE TTSS   S HHHHHHHHHHTTS  EEE BTTTTBSHHHHHHHHHHHHHHHHH :    
ExpBur          :beeebebeeeeebbbbbbbbeeeeeeeebeeeebeebbeeeeebebbbbbbeeeeebeebbebbbebbbebeee:    
Contact         :  a  a             ee ee                         eee                                                


Input Residue Numbers for Focused Sites

ex) 2,15,123