Protein Model on 1vg9 assembly_id=1
(TEMPLATE: 
1vg9
assembly_id:1
)Protein Model on 1vg9 assembly_id=1
(TEMPLATE: 1vg9
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [501 aa] | Rab proteins geranylgeranyltransferase component A 1 :RAE1_RAT | 17S 42G 44D 45F 62W 63D 65A 67Q 69R 70F 71Q 72S 74G 75V 76A 77F 79R 108I 111S (identity: 100.0 %/97.1 %) | |
| 2 | b | A(RAB7A_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [169 aa] | Ras-related protein Rab-7 :RAB7_RAT | |
| 3 | c | I 1 (B) | non-polymer(MG) | MAGNESIUM ION | 22T 63D (identity: 100.0 %/97.1 %) | |
| 4 | d | J 1 (B) | non-polymer(K) | POTASSIUM ION | 71Q (identity: 100.0 %/97.1 %) | |
| 5 | e | K 1 (B) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 16D 17S 18G 19V 20G 21K 22T 23S 33F 34S 35N 125N 126K 128D 129L 155S 156A 157K (identity: 100.0 %/97.1 %) | |
| 6 | f | L 1 (B) | non-polymer(P33) | 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL | 71Q 98T 101S 102W 105E (identity: 100.0 %/97.1 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:1vg9_B_1 identity=97.1% |
queryA 6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE: 105
:****************************** *****************************************************************:
1vg9_B_1 6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNXXXXXIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE: 105
SecStr : EEEEEEE TTSSHHHHHHHHHH ----- EEEEEEEETTEEEEEEEE TTTTTTT HHHHTT SEEEEEEETT HHHHHTHHHHHHH:
ExpBur :ebebbbbbbbbeebbbeebbebbbeeeeee-----eeeeeeeeebebeeeebbbebebbeeebeeeebeeebbeebbbbbbbbbbeeeebbebbeebbee:
Contact : eaeeeece eee a aa aa a a aaaa aaaa a f ff f
Contact : e e c d
Contact : f
queryA 106:FLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE: 179
:**************************************************************************:
1vg9_B_1 106:FLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE: 179
SecStr :HHHHH SSGGG EEEEEE TTSS S HHHHHHHHHHTTS EEE BTTTTBSHHHHHHHHHHHHHHHHH :
ExpBur :beeebebeeeeebbbbbbbbeeeeeeeebeeeebeebbeeeeebebbbbbbeeeeebeebbebbbebbbebeee:
Contact : a a ee ee eee
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