Protein Model on 1vg0 assembly_id=1
(TEMPLATE: 
1vg0
assembly_id:1
)Protein Model on 1vg0 assembly_id=1
(TEMPLATE: 1vg0
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [481 aa] | Rab proteins geranylgeranyltransferase component A 1 :RAE1_RAT | 42G 43A 44D 45F 62W 63D 65A 67Q 69R 70F 71Q 72S 74G 75V 76A 77F 79R 111S 113R 186F 189P 190I 191K 192L (identity: 100.0 %/97.3 %) | |
| 2 | b | A(RAB7A_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [182 aa] | Ras-related protein Rab-7 :RAB7_RAT | |
| 3 | c | C 1 (A) | non-polymer(CL) | CHLORIDE ION | ||
| 4 | d | D 1 (A) | non-polymer(GER) | GERAN-8-YL GERAN | ||
| 5 | e | E 1 (B) | non-polymer(MG) | MAGNESIUM ION | 22T 63D (identity: 100.0 %/97.3 %) | |
| 6 | f | F 1 (B) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 16D 17S 18G 19V 20G 21K 22T 23S 33F 34S 125N 126K 128D 129L 155S 156A 157K (identity: 100.0 %/97.3 %) | |
| 7 | g | G 1 (B) | non-polymer(PG4) | TETRAETHYLENE GLYCOL | 71Q 101S 102W 105E (identity: 100.0 %/97.3 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:1vg0_B_1 identity=97.3% |
queryA 6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE: 105
:****************************** *****************************************************************:
1vg0_B_1 6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNXXXXXIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE: 105
SecStr : EEEEEEES TTSSHHHHHHHHHHS ----- EEEEEEEETTEEEEEEEE TTTTTTT HHHHTT SEEEEEEETT HHHHHTHHHHHHH:
ExpBur :ebebbbbbbbbeebbbeebbebbbeeeeee-----eeeeeeebebebeeeebbbbbebbeeebeeeebeeebbeebbbbbbbbbbbeeebbeebeebbee:
Contact : ffffffef ff aaaa aa a a aaaa aaaa a gg g
Contact : f e g
queryA 106:FLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKL: 192
:***************************************************************************************:
1vg0_B_1 106:FLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKL: 192
SecStr :HHHHH SSGGG EEEEEE TTSS S HHHHHHHHHTTTS EEEEBTTTTBSHHHHHHHHHHHHHHHHHHHHHH S :
ExpBur :bbeebebeeeeebbbbbbbbeeeeeeeebeeeebeebbeeeeebebebbbbeeeeebeebbeebbeebbebbeeeeeeeeeeeeeee:
Contact : a a ff ff fff a aaaa
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