Protein Model on 1ek0 assembly_id=1
(TEMPLATE: 
1ek0
assembly_id:1
)Protein Model on 1ek0 assembly_id=1
(TEMPLATE: 1ek0
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RAB7A_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [170 aa] | PROTEIN (GTP-BINDING PROTEIN YPT51) :YPT51_YEAST | |
| 2 | b | B 1 (A) | non-polymer(MG) | MAGNESIUM ION | 22T(S) 40T (identity: 50.0 %/40.1 %) | |
| 3 | c | C 1 (A) | non-polymer(NI) | NICKEL (II) ION | 54D(E) 55R(H) (identity: 0.0 %/40.1 %) | |
| 4 | d | D 1 (A) | non-polymer(GNP) | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | 17S(A) 18G(A) 19V 20G 21K 22T(S) 23S 33F 34S(A) 35N(E) 37Y(K) 39A(P) 40T 65A 66G 67Q 125N 126K 128D 155S 156A 157K (identity: 68.2 %/40.1 %) | |
| 5 | e | E 1 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 52V(I) 53D(N) 55R(H) (identity: 0.0 %/40.1 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:1ek0_A_1 identity=40.1% |
queryA 9:LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI: 108
: * ** *** * * * **** *** * * ********** ** ** * * *** * * * * :
1ek0_A_1 4:IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPUYYRNAQAALVVYDVTKPQSFIKARHWVKELHE: 103
SecStr :EEEEEE STTSSHHHHHHHHHHS TT SSEEEEEEEEEETTEEEEEEEEEE SGGGGGGHHHHHTT SEEEEEEETT HHHHHHHHHHHHHHHH:
ExpBur :bebbbbbeeebbbbbbbebbeeeeeeeeeeebebbeeeeeebeeeeeebebbbebbbeeeeeeeebeebbeebebbbbbbbbbeeebbeebeebbeebee:
Contact : dddddbd ddd d db eecc ddd
Contact : d d e
queryA 109:QASPRDPENFPFVVLGNKIDL----ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA: 170
:*** ***** * ** * ****** ** * * :
1ek0_A_1 104:QAS----KDIIIALVGNKIDULQEGGERKVAREEGEKLAEEK-GLLFFETSAKTGENVNDVFLGIG: 164
SecStr :HS ----TT EEEEEEE GGGGGSS S HHHHHHHHHHH-T EEEE TTT TTHHHHHHHHH:
ExpBur :ebe----eebebbbbbbebeeeeeeeeeebeeeebeebbeee-ebbbbbbbbeeeeebeebbebbb:
Contact : dd d ddd
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