Protein Model on 8rnd assembly_id=1
(TEMPLATE: 
8rnd
assembly_id:1
)Protein Model on 8rnd assembly_id=1
(TEMPLATE: 8rnd
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(CATL1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [219 aa] | Cathepsin S :CATS_HUMAN | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [11 aa] | NNPI-C10 inhibitor | 134Q(S) 135C 136G 139W 174G 176E(K) 178C 179N 180G 181G 182L(F) 183M 184D(T) 227D(E) 248A(G) 252G(R) 274M(V) 275D(N) 276H 277G 327A(F) (identity: 52.4 %/57.5 %) | |
| 3 | c | C 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | 233K(D) 236M(K) 294K(E) 316K(R) 317D(N) (identity: 0.0 %/57.5 %) | |
| 4 | d | D 1 (A) | non-polymer(PGE) | TRIETHYLENE GLYCOL | 230K(G) 232E 272E(Q) 317D(N) 319R(G) 320N (identity: 33.3 %/57.5 %) | |
| 5 | e | E 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | 150Q 332T(E) 333V(I) (identity: 33.3 %/57.5 %) | |
| 6 | f | F 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | 130K 131N(Y) 204Y (identity: 66.7 %/57.5 %) | |
| 7 | g | G 1 (A) | non-polymer(NO3) | NITRATE ION | 263I(V) 265F(Y) 293N(K) 315A 318R(K) (identity: 20.0 %/57.5 %) | |
| 8 | h | H 1 (A) | non-polymer(GOL) | GLYCEROL | 269C 271S(T) 272E(Q) 318R(K) 319R(G) 320N 321H 322C (identity: 50.0 %/57.5 %) | |
| 9 | i | I 1 (A) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | 205E(K) 209E(Q) 210S(K) 212K(Q) (identity: 0.0 %/57.5 %) | |
| 10 | j | J 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | 131N(Y) 133G 134Q(S) (identity: 33.3 %/57.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8rnd_A_1 identity=57.5% |
queryA 115:PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ-GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY: 213
:* ******** ** ** ** ** ****** **** * *** * *** ******* ** ***** * **** ** * ** **** * * *:
8rnd_A_1 8:PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY: 107
SecStr : S EETTTTT B SSB HHHHHHHHHHHHHHHHHHS B HHHHHHHS GGGT TTB HHHHHHHHHHHT EEBTTTS SS :
ExpBur :eeebbbeeeebbbebbebeebebbbbbbbbbbbbbbbeeeeeeeebbbbbbbbbbbeeebebebbeeeebbebbebbeeeebbbbeeebebeeeeeeeee:
Contact : ff jbbb b e b b bbbbbbb fi ii i
Contact : j j
queryA 214:NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYV: 312
: ** * * * * *** ** ** ** * ** * * * ** * ********* ********* * ** :
8rnd_A_1 108:DSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC-TQNVNHGVLVVGYG----DLNGKEYWLVKNSWGHNFGEEGYI: 202
SecStr : GGGEEE EEEE TT HHHHHHHHHHT EEEEE SHHHHT SSEE TT - S EEEEEEEEE----EETTEEEEEEE SB TTSTBTTEE:
ExpBur :eeeeebbebeeeeebeeeebeebbebbbeebbbbbbbbbebeebeebeebbbebeeb-eeeeebbbbbbbbb----eeeeeebbbbbbbebeebeeebbb:
Contact : b bd dc c b b g g h hd bbbb gc
Contact : h
queryA 313:KMAKDRRNHCGIASAASYPTV: 333
: ** ******* *** :
8rnd_A_1 203:RMARNKGNHCGIASFPSYPEI: 223
SecStr :EEE SSSSGGGTTTS EEEE :
ExpBur :bbbbeeebbbbbbbebbbbee:
Contact : gccgddhh b ee
Contact : dhhh
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