Protein Model on 6jd0 assembly_id=1 (TEMPLATE: 6jd0 assembly_id:1 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(CATL1_HUMAN) A 1 (A) polymer(polypeptide(L)) [314 aa] Cathepsin L1 :CATL1_HUMAN
2 b B 1 (A) non-polymer(GOL) GLYCEROL 58M 62H 71H 254E 255S (identity: 100.0 %/96.8 %)
3 c C 1 (A) non-polymer(GOL) GLYCEROL 120W 153R 240A 241T (identity: 100.0 %/96.8 %)
4 d D 1 (A) non-polymer(GOL) GLYCEROL 105V 106F 107Q 330Y (identity: 100.0 %/96.8 %)
5 e E 1 (A) non-polymer(GOL) GLYCEROL 112Y 115P 120W 123K 240A (identity: 100.0 %/96.8 %)
6 f F 1 (A) non-polymer(GOL) GLYCEROL 151M 157R 159I 219V (identity: 100.0 %/96.8 %)
7 g G 1 (A) non-polymer(GOL) GLYCEROL 121R 126V 127T 128P 129V 299K 311Y (identity: 100.0 %/96.8 %)
8 h H 1 (A) non-polymer(GOL) GLYCEROL 97N 98R 99K 101R 182L(Y) 184D 185Y 327A(L) (identity: 75.0 %/96.8 %)
9 i I 1 (A) non-polymer(GOL) GLYCEROL 200E 201S 203P (identity: 100.0 %/96.8 %)
10 j J 1 (A) non-polymer(GOL) GLYCEROL 115P 116R 117S 285F (identity: 100.0 %/96.8 %)
11 k K 1 (A) non-polymer(GOL) GLYCEROL 194G 195G 218S 219V 220A 221N (identity: 100.0 %/96.8 %)
12 l L 1 (A) non-polymer(GOL) GLYCEROL 121R 297L 308M(N) 311Y 313K (identity: 80.0 %/96.8 %)
13 m M 1 (A) non-polymer(GOL) GLYCEROL 41G 42M 43N 44E (identity: 100.0 %/96.8 %)
14 n N 1 (A) non-polymer(GOL) GLYCEROL 319R (identity: 100.0 %/96.8 %)
15 o O 1 (A) non-polymer(GOL) GLYCEROL 108E 109P 110L 111F (identity: 100.0 %/96.8 %)
16 p P 1 (A) non-polymer(CL) CHLORIDE ION 158L (identity: 100.0 %/96.8 %)
17 q Q 1 (A) non-polymer(CL) CHLORIDE ION 122E(K) (identity: 0.0 %/96.8 %)
18 r R 1 (A) non-polymer(CL) CHLORIDE ION 229P 230K (identity: 100.0 %/96.8 %)
19 s S 1 (A) non-polymer(NA) SODIUM ION 124G 152F 158L (identity: 100.0 %/96.8 %)
20 t T 1 (A) non-polymer(NA) SODIUM ION 129V 130K 131N 303G (identity: 100.0 %/96.8 %)
21 u U 1 (A) non-polymer(NA) SODIUM ION 261E (identity: 100.0 %/96.8 %)
22 v V 1 (A) non-polymer(NA) SODIUM ION 60E 64Q 67R (identity: 100.0 %/96.8 %)
23 w W 1 (A) non-polymer(NA) SODIUM ION 74T 261E (identity: 100.0 %/96.8 %)
24 x X 1 (A) non-polymer(PO4) PHOSPHATE ION 60E 63N 67R (identity: 100.0 %/96.8 %)
25 y Y 1 (A) non-polymer(PO4) PHOSPHATE ION 260K (identity: 100.0 %/96.8 %)
26 z Z 1 (A) non-polymer(PO4) PHOSPHATE ION 63N 67R (identity: 100.0 %/96.8 %)
27 1 AA 1 (A) non-polymer(PO4) PHOSPHATE ION 89R 178C 179N (identity: 100.0 %/96.8 %)
28 2 BA 1 (A) non-polymer(PO4) PHOSPHATE ION 265F 318R 319R (identity: 100.0 %/96.8 %)
29 3 CA 1 (A) non-polymer(PO4) PHOSPHATE ION 131N 303G 304E 305E (identity: 100.0 %/96.8 %)
30 4 DA 1 (A) non-polymer(PO4) PHOSPHATE ION 98R 101R 230K (identity: 100.0 %/96.8 %)
31 5 EA 1 (A) non-polymer(PO4) PHOSPHATE ION 155T 156G 157R (identity: 100.0 %/96.8 %)
32 6 FA 1 (A) non-polymer(POL) N-PROPANOL 60E 76A 77M (identity: 100.0 %/96.8 %)
33 7 GA 1 (A) non-polymer(POL) N-PROPANOL 51V 54K 55N 83M 254E 258F (identity: 100.0 %/96.8 %)
34 8 HA 1 (A) non-polymer(POL) N-PROPANOL 230K 271S 272E 320N 326S (identity: 100.0 %/96.8 %)
35 9 IA 1 (A) non-polymer(POL) N-PROPANOL 88F 92M 252G 257L (identity: 100.0 %/96.8 %)
36 A JA 1 (A) non-polymer(POL) N-PROPANOL 130K 131N 204Y (identity: 100.0 %/96.8 %)
37 B KA 1 (A) non-polymer(POL) N-PROPANOL 39L (identity: 100.0 %/96.8 %)
38 C LA 1 (A) non-polymer(POL) N-PROPANOL 103G 104K 188Q 191Q 224G 225F (identity: 100.0 %/96.8 %)
39 D MA 1 (A) non-polymer(POL) N-PROPANOL 156G 157R 158L (identity: 100.0 %/96.8 %)
40 E NA 1 (A) non-polymer(POL) N-PROPANOL 91V 92M 93N 132Q 136G 137S 138C(S) 139W 275D 276H (identity: 90.0 %/96.8 %)
41 F OA 1 (A) non-polymer(POL) N-PROPANOL 128P 160S (identity: 100.0 %/96.8 %)
42 G PA 1 (A) non-polymer(PGE) TRIETHYLENE GLYCOL 201S 202Y 212K 214N 217Y (identity: 100.0 %/96.8 %)
43 H QA 1 (A) non-polymer(PGE) TRIETHYLENE GLYCOL 72S 263I 265F 292N 293N 294K 315A 318R (identity: 100.0 %/96.8 %)
44 I RA 1 (A) non-polymer(PGE) TRIETHYLENE GLYCOL 259Y 261E 262G 286E 308M(N) 313K (identity: 83.3 %/96.8 %)
45 J SA 1 (A) non-polymer(PGE) TRIETHYLENE GLYCOL 19L 20T 21F 23H (identity: 100.0 %/96.8 %)
46 K TA 1 (A) non-polymer(PGE) TRIETHYLENE GLYCOL 99K 102K 173Q 185Y (identity: 100.0 %/96.8 %)
47 L UA 1 (A) non-polymer(PGE) TRIETHYLENE GLYCOL 131N 133G 205E 206A (identity: 100.0 %/96.8 %)
48 M VA 1 (A) non-polymer(EOH) ETHANOL 250D 253H 268D 270S (identity: 100.0 %/96.8 %)
49 N WA 1 (A) non-polymer(EOH) ETHANOL 33K 38R 39L (identity: 100.0 %/96.8 %)
50 O XA 1 (A) non-polymer(EOH) ETHANOL 167V 168D 171G 175N 208E (identity: 100.0 %/96.8 %)
51 P YA 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 117S 118V 283Y 284G 285F 295Y (identity: 100.0 %/96.8 %)
52 Q ZA 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 21F 29W 45E 49R (identity: 100.0 %/96.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6jd0_A_1 identity=96.8%
queryA        18:TLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRS: 117
                :****************************************************************************** *********************:
6jd0_A_1      45:TLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFXNRKPRKGKVFQEPLFYEAPRS: 144
SecStr          :     GGGHHHHHHHHHHTT    HHHHHHHHHHHHHHHHHHHHHHHHHHTT  SEEE   TTTT  HHHHHTTS   -      SEE    TT    S :    
ExpBur          :eeebeeebeeebeebbeebeeebeeeebbebbbebbebbebbeebbeeeeeeeeebebebbbbbbbeeebbeebbbeb-eeeeeebeebeeeeeeeeeee:    
Contact         : JJJ J     Q   N    NB mmmmQ   Q 7  77  b v bxv  v   bH w 66     7    91 E9E   hhh hKCCdddooooe  ejj
Contact         :   Q                 N                    x  z   x                        E     4K 4             j P
Contact         :                                          6      z                                                  

queryA       118:VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKY: 217
                :**** *************** ******************************************* ***********************************:
6jd0_A_1     145:VDWRKKGYVTPVKNQGQCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGYMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKY: 244
SecStr          :EEGGGGT      B  SSS HHHHHHHHHHHHHHHHHHS    B HHHHHHH TTTT  GGG   HHHHHHHHHHHT EEBTTTS   SS       GGG:    
ExpBur          :bbbeeeebbbebbebeebbbbbbbbbbbbbbbbbbeeeeeeeebbbbbbbbbbeeeebebeebbbbbbbbebbeeeebbbbbeebeeeeeeeeeebeeee:    
Contact         :P cgqes ggggttEL  EEEE           fsc 55fpfF      OO  O K O  11  h hh  C  C  kk    iiGiALL O   G G  G
Contact         :  el      FtA3                        D5s                          K               G                
Contact         :             A                         DD                                                           
Contact         :             L                                                                                      

queryA       218:SVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKD: 317
                :******************************************************** ** ************* ****************  ********:
6jd0_A_1     245:SVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDLDHAVLVVGYGFESTESXNNKYWLVKNSWGEEWGNKGYVKMAKD: 344
SecStr          :EEE  SEEEE  S HHHHHHHHHHH  EEEEE   SHHHHTEEEEEE  TT  SS   EEEEEEEEEE SS  -  EEEEEE SBTTTSTBTTEEEEE S:    
ExpBur          :eebebebbbbbeeebebbebbbbbbbbbbbbbbbeeebbbbbeeebbebeebeeeebebbbbbbbbbeeeeee-ebebbbbbbbbbeebbeebbbebbbe:    
Contact         :kfkk  CC   rr         cc        M 9Mbb 97IyuIH 2  M M88  EE      PPjI     HHHP l g   t33  l  g l H  
Contact         : k          4         e             7      w   H                   P                 3    I  l I    
Contact         :            8                              I                                                        

queryA       318:RRNHCGIASAASYPTV: 333
                :********* ******:
6jd0_A_1     345:RRNHCGIASLASYPTV: 360
SecStr          :SSSGGGTTTT EEEE :    
ExpBur          :eebbbbbbbbbbbbee:    
Contact         :2n8     8h  d                                                                                       
Contact         :H2

Input Residue Numbers for Focused Sites

ex) 2,15,123