Protein Model on 5z5o assembly_id=1 (TEMPLATE: 5z5o assembly_id:1 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(CATL1_HUMAN) A 1 (A) polymer(polypeptide(L)) [309 aa] Cathepsin K :CATK_HUMAN
2 b C 1 (A) non-polymer(GOL) GLYCEROL 38R(K) 48R 82D 83M 87E 91V(K) 134Q (identity: 71.4 %/53.5 %)
3 c D 1 (A) non-polymer(GOL) GLYCEROL 121R 126V 127T 128P 129V 311Y (identity: 100.0 %/53.5 %)
4 d E 1 (A) non-polymer(GOL) GLYCEROL 201S(A) 212K(M) 213Y (identity: 33.3 %/53.5 %)
5 e F 1 (A) non-polymer(GOL) GLYCEROL 76A 260K(S) 261E(K) 305E(N) 307G 308M(N) (identity: 33.3 %/53.5 %)
6 f G 1 (A) non-polymer(GOL) GLYCEROL 55N 84T 85S(U) (identity: 66.7 %/53.5 %)
7 g H 1 (A) non-polymer(GOL) GLYCEROL 128P 129V 130K 160S(N) (identity: 75.0 %/53.5 %)
8 h I 1 (A) non-polymer(GOL) GLYCEROL 104K(S) 223T(R) (identity: 0.0 %/53.5 %)
9 i J 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 58M(Y) 61L(I) 62H 65E (identity: 50.0 %/53.5 %)
10 j K 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 161L 196L(I) (identity: 50.0 %/53.5 %)
11 k L 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 89R(V) 93N(T) 94G 95F(L) 275D(N) (identity: 20.0 %/53.5 %)
12 l M 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 130K 131N (identity: 100.0 %/53.5 %)
13 m N 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 57K 60E(S) 61L(I) (identity: 33.3 %/53.5 %)
14 n O 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 27A(T) 31K(L) (identity: 0.0 %/53.5 %)
15 o P 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 70K(V) 71H 265F(Y) 266E(D) 267P(E) (identity: 20.0 %/53.5 %)
16 p Q 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 118V 119D 122E(K) 123K (identity: 75.0 %/53.5 %)
17 q R 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 40Y 41G(N) 44E(D) 48R (identity: 50.0 %/53.5 %)
18 r S 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 108E(D) 222D(C) 223T(R) 226V(R) (identity: 0.0 %/53.5 %)
19 s T 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 128P 158L 160S(N) (identity: 66.7 %/53.5 %)
20 t U 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 120W(Y) 125Y 153R(K) 240A 241T(R) 242V (identity: 50.0 %/53.5 %)
21 u V 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 104K(S) 225F(Y) 227D(E) (identity: 0.0 %/53.5 %)
22 v W 1 (A) non-polymer(SO4) SULFATE ION 40Y 41G(N) 42M(N) 43N(K) 45E (identity: 40.0 %/53.5 %)
23 w X 1 (A) non-polymer(PEG) DI(HYDROXYETHYL)ETHER 119D 122E(K) 285F(I) 286E(Q) 295Y(H) (identity: 20.0 %/53.5 %)
24 x Y 1 (A) non-polymer(PEG) DI(HYDROXYETHYL)ETHER 116R(D) 233K 236M(K) 294K 316K(R) 317D(N) (identity: 33.3 %/53.5 %)
25 y Z 1 (A) non-polymer(PEG) DI(HYDROXYETHYL)ETHER 79A(H) 92M 131N 133G 134Q (identity: 80.0 %/53.5 %)
26 z AA 1 (A) non-polymer(PEG) DI(HYDROXYETHYL)ETHER 210S 211C 215P (identity: 100.0 %/53.5 %)
27 1 BA 1 (A) non-polymer(PEG) DI(HYDROXYETHYL)ETHER 42M(N) 43N(K) (identity: 0.0 %/53.5 %)
28 2 CA 1 (A) non-polymer(PEG) DI(HYDROXYETHYL)ETHER 84T 86E 90Q (identity: 100.0 %/53.5 %)
29 3 DA 1 (A) non-polymer(CL) CHLORIDE ION 156G 157R(K) 158L (identity: 66.7 %/53.5 %)
30 4 EA 1 (A) non-polymer(NA) SODIUM ION 164Q 168D 202Y 209E (identity: 100.0 %/53.5 %)
31 5 B 2 (B) polymer(polypeptide(L)) [77 aa] Cathepsin K :CATK_HUMAN 151M(L) 154K 155T 194G(R) 195G (identity: 60.0 %/53.5 %)
32 6 FA 2 (B) non-polymer(GOL) GLYCEROL
33 7 GA 2 (B) non-polymer(EDO) 1,2-ETHANEDIOL
34 8 HA 2 (B) non-polymer(EDO) 1,2-ETHANEDIOL
35 9 IA 2 (B) non-polymer(EDO) 1,2-ETHANEDIOL
36 A JA 2 (B) non-polymer(SO4) SULFATE ION 154K 333V(M) (identity: 50.0 %/53.5 %)
37 B KA 2 (B) non-polymer(SO4) SULFATE ION
38 C LA 2 (B) non-polymer(SO4) SULFATE ION
39 D MA 2 (B) non-polymer(SO4) SULFATE ION
40 E NA 2 (B) non-polymer(PEG) DI(HYDROXYETHYL)ETHER 155T (identity: 100.0 %/53.5 %)
41 F OA 2 (B) non-polymer(MPD) (4S)-2-METHYL-2,4-PENTANEDIOL 147L 150Q 151M(L) 154K 190V 333V(M) (identity: 66.7 %/53.5 %)
42 G PA 2 (B) non-polymer(MPD) (4S)-2-METHYL-2,4-PENTANEDIOL
43 H QA 2 (B) non-polymer(MPD) (4S)-2-METHYL-2,4-PENTANEDIOL
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5z5o_A_1 identity=53.5%
queryA        25:LEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFY-----EAPRSV: 118
                :*   *  **  *   *     *  **  **** * *  ** *   * *    ***  **** **  * * *     *         *        ** **:
5z5o_A_1      28:LDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTUEEVVQKMTGL--KVPXXXSRSNDTLYIPEWXXRAPDSV: 125
SecStr          :GHHHHHHHHHHTT   SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTS SEEE   TTTTS HHHHHHHH  B--   ---   GGGB     --   S E:    
ExpBur          :beeebeebbeeeeeebeeeeeeeeebeebbebeeebeebeeebeeeeeebebeebbbbbbeeebbeeebbbb--eee---eeeeebebebee--ebeeeb:    
Contact         :  n   n      b qqvv1qv  b      f mi mii  i    oo    e  y  bbff2b k2bykkk        h   r            x p
Contact         :               vv11     q            m                      2                   u                   

queryA       119:DWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS: 218
                :* * *************** ****  ******   *** *  ** ******     * ** ** *  ****** * * ***  ***   **** ***   :
5z5o_A_1     126:DYRKKGYVTPVKNQGQCGSSWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGK: 223
SecStr          :ETTTTT      B  SSB HHHHHHHHHHHHHHHHHHS    B HHHHHHH TT--S TTB B HHHHHHHHHHTT   BTTTS   SS    SS    S:    
ExpBur          :bbeeeeebbebeebeebbbbbbbbbbbbbbbbeeeeeeeeeebbbbbbbbbbee--bebeebbebbbbbbbbbbeeebbeeeebeeeeeeeeeeeeeeee:    
Contact         :ptcpp tccccgl yb            F  F5 t5533s gj  4   4                     F   55j    d4      4zzdd z   
Contact         :w  w     ggly  y                F  AE  3 s                                                          
Contact         :         s                         F                                                                

queryA       219:VANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKD: 317
                : *   *   **   ****  *** *** *** **   ** **  * *    * *    * ** ****        ** *  ****** **  **  **  :
5z5o_A_1     224:AAKCRGYREIPEGNEKALKRAVARVGPVSVATDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK----GNKHWIIKNSWGENWGNKGYILMARN: 319
SecStr          :  SS  EEE  TT HHHHHHHHHHT  EEEEE   SHHHHTEEEEEE  TT  TT   EEEEEEEEEEET----TEEEEEEE SB TTSTBTTEEEEESS:    
ExpBur          :eeeeebbebbeeeebebbebbbeebbbbbbbbbbebbbbbbbbebbbebeebeeeebbbbbbbbbbbeee----eeebbbbbbbbbeebbeebbbbbbbe:    
Contact         :   rh uru      x  x   ttt                 ee   ooo       k         ww       xw         e ee  c    xx
Contact         :    r                                                                                               

queryA       318:RRNHCGIASAASYPTV: 333
                :  * ****  ** *  :
5z5o_A_1     320:KNNACGIANLASFPKM: 335
SecStr          :SSSGGGTTTS EEE  :    
ExpBur          :eebbbbbbbbbbbbee:    
Contact         :               A                                                                                    
Contact         :               F

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