[pdbjlvh2]Protein Model on 2r9m assembly

Protein Model on 2r9m assembly_id=1 (TEMPLATE: 2r9m assembly_id:1 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(CATL1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [217 aa]	Cathepsin S :CATS_HUMAN
2	b		C 1 (A)	non-polymer(Y11)	N-[(1S)-2-[(4-cyano-1-methylpiperidin-4-yl)amino]-1-(cyclohexylmethyl)-2-oxoethyl]morpholine-4-carboxamide	132Q 136G 137S(A) 138C 139W 174G 176E(K) 179N 180G 181G 182L(F) 183M 274M(V) 275D(N) 276H (identity: 66.7 %/57.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:2r9m_A_1 identity=57.5%

queryA       115:PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ-GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY: 213
                :* ******** ** ** ** ** ****** **** *   *** * *** *******    ** ***** *  ****  ** * **  **** *    * *:
2r9m_A_1       2:PDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY: 101
SecStr          : S EEGGGGT      B TTSB HHHHHHHHHHHHHHHHHHS    B HHHHHHHS GGGT  TTB   HHHHHHHHHHHT EEBTTTS   SS      :    
ExpBur          :eeebbbeeeebbbebbebeebebbbbbbbbbbbbbbbeeeeeeeeebbbbbbbbbbeeebebebbeeeebeebbebbeeeebbbbeeebebeeeeeeeee:    
Contact         :                 b   bbbb                                   b b  bbbbb                              

queryA       214:NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYV: 312
                :  **  *        *   *  *  ***  ** **  ** * **  *  * * ** *      *********          *********   *  ** :
2r9m_A_1     102:DSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC-TQNVNHGVLVVGYG----DLNGKEYWLVKNSWGHNFGEEGYI: 196
SecStr          : GGGEEE   EEEE  TT HHHHHHHHHHT  EEEEE   SHHHHT  SS B  TT - S   EEEEEEEEE----EETTEEEEEEE SB TTSTBTTEE:    
ExpBur          :eeeeeebebeeeeebeeeebebbeebbbeebbbbbbbbbebeebeebeeeebebeeb-eeeeebbbbbbbbb----eeeeeebbbbbbbebeebeeebbb:    
Contact         :                                                             bbb                                    

queryA       313:KMAKDRRNHCGIASAASYPTV: 333
                : **    *******  ***  :
2r9m_A_1     197:RMARNKGNHCGIASFPSYPEI: 217
SecStr          :EEE SSSSGGGTTTS EEEE :    
ExpBur          :ebbbeeebbbbbbbebbbbee:

Protein Model on 2r9m assembly_id=1 (TEMPLATE: 2r9m assembly_id:1 )

Input Residue Numbers for Focused Sites