Protein Model on 6uu6_D_1_J_1 (TEMPLATE: 6uu6 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query F)
1 a FD 1 (DDD) polymer(polypeptide(L)) [1362 aa] DNA-directed RNA polymerase subunit beta' :RPOC_ECOLI
2 b J 1 (CCC) non-polymer(UTP) URIDINE 5'-TRIPHOSPHATE 425R 427P 458N 460D 462D 929Q 932M 933R 936H
FOCUSED TEMPLATE
MODEL[1] TEMPLATE:6uu6_D_1
6uu6_D_1       1:XXXXXXXXXXXXXXEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRE: 100
SecStr          :--------------   S EE     HHHHHHHEEEE      B SSS SB TTSTT HHHH  SSTT  SSS S TTTS S   TTT    S GGGGGT:    
ExpBur          :--------------eeeebeeeebebbeebeeebeeebeeeeebeeeeeebeeebbbbbebbbbeeebebeeeebeeeeeeeeebeebbbebbebebbee:    

6uu6_D_1     101:RMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQ: 200
SecStr          : EEEEEEEEEEE HHHHTSTT SHHHHHT  HHHHHHHHTTSSEEEEEESSTTS SS EE HHHHHHHHHHT SSEEEE SHHHHHHHHHH  HHHHHHH:    
ExpBur          :bebbbebebbbbbbbbbebeebbbbebbebeeeebeebbebebbbbbebeeeebeeeeebeeeeeeebeeeebeebebebbbebbbebbeebebeebbee:    

6uu6_D_1     201:LREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ: 300
SecStr          :HHHHHHH   HHHHHHHHHHHHHHHHHHHHT  GGGGEEEEEEE  GGGS EEE TTS EEE THHHHHHHHHHHHHHHHHHHHTT  HHHHHHHHHHHH:    
ExpBur          :beeebeeeeeeeebeebbebbebbeebeebebebbbbbbebbebbbbeebeeeeeeeeeeeeeebbebbeebbebbbebeeeeeeebeeeebbebbebbb:    

6uu6_D_1     301:EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM: 400
SecStr          :HHHHHHHSTTTTSS  B SSSSB   HHHHHSSTTSSHHHHTSS   SSEEEEEEEE TTS TTEEEEEHHHHHHHTHHHHHHHHHHTTS SSHHHHHHH:    
ExpBur          :ebbbbbbbbebeeeebeeeeeeebebebebeeeeebebeeeeeeeeeeeeeebebeebeebebbbbbbbeebbbebbeeebbeebeeeeebeeeeebeeb:    

6uu6_D_1     401:VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII: 500
SecStr          :HHTT HHHHHHHHHHHTT  EEEE SS  SGGGEEEEEEEEESSSSEEE GGGHHHHT  TTT EEEEE   SHHHHHHHHHTSBTTT  B SSSSSBS :    
ExpBur          :beeeeeebeebbeebbeebbbbbebeeebbebbebbbbbeebeeeebebbebbbebbbbeeeebebbbebbeeeebeeebeeeebbbebbbbbbeeebbb:    
Contact         :                        b b                              b b b                                      

6uu6_D_1     501:VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA: 600
SecStr          :   THHHHHHHHHH   SS TTTTEEEEHHHHHHHHHHHTS  TT EEEEEEEEEEE SSS EEEEEEEEEEEHHHHHHHHHS TTS THHHHS   HHH:    
ExpBur          :bbeeebbbbbbebbbebbeeeeeeeebebbeebeebbeeeebebbbebebebebeeeeeeeeeeeeeeebebbbbbbbbbeebeebbebebbeeebbeeb:    

6uu6_D_1     601:ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN: 700
SecStr          :HHHHHHHHHHHT HHHHHHHHHHHHHHHHHHHHHH     GGGS   TTHHHHHHHHHHHHHHHHHHHHHSS  HHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebbbeeeeeebbebbbebbebbeebbeebeeeeeeeebeebeebeebbeebeeebeebeeeeeeeeeeeeebbbebbebbbebbeebbebbbeb:    

6uu6_D_1     701:LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL: 800
SecStr          :HHS EEEEETTEEEEE    HHHHHHHHTSS  HHHHHHHTS  B  B TTS B SS B   TTT   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bebebeeeeeeeeeebebebbbbbebebebeeeeeebebebbbbbbbbeeebebbeebbebbeeeebeeebeeebeebeeebeebeeeeeeebeebbebb:    

6uu6_D_1     801:VDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG: 900
SecStr          :HHHTSS  EEES       EEE  B  SSS SB TTTTTTT BB S    SS SS  S SS B  HHHHHHHHHHT   EEE  SSS   TTSEEHHHH :    
ExpBur          :ebbbbebbbeeeeeebeebbebebbbeebeeeeebeebbebbbbbeeeeeeeeeeeebeeeeebeeeebeebeeeeeeebebbbbbbbebbebbbbebbb:    

6uu6_D_1     901:RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYG:1000
SecStr          :EETTTTEE  TT  HHHHHHHHHHHHHHHHHHHHHHH SS         EE SS EEEEEES  EEE TTS EEE  SSEEEEEE SS  EEEEEEE TT:    
ExpBur          :bbbbebeebeebbebbebbbbbbbbbbbbbbeeebeeeeebeeeeeeeebebeeebebebeeeeeeebeeeeebbbbeebebebbeeeeeeebbbebebb:    
Contact         :                            b  bb  b                                                                

6uu6_D_1    1001:AVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYF:1100
SecStr          : EESS TT EE TT EEEE  SS EEEE SS BEEEEES  BTTTEEEE  STT   EEEE  TTT  TTTTT   EEEEE SSS B B TTSS B EEE:    
ExpBur          :bebeebeeeebeeeeebbebeeebebbbbebebebeebebeeeebbeeeeeeeeeebebbbbeeeebeeebeeeebbbbbbeeeeeebebeeeeeebbbe:    

6uu6_D_1    1101:LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE:1200
SecStr          :  TT BB S SS  B TT EEEEE       SSHHHHHHHHHHHHTT   SS   B SS EEEEEEEEETTEEEEEEE SS  S EE  B SSS BSS S:    
ExpBur          :beeebbbeeeeeeebebbeebbebeeeebeeebbeebbeebbebbbbeeeeeebebbbeebebeeeeeeebebebebebeeeeeeeeeebeeebebebee:    

6uu6_D_1    1201:GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGA:1300
SecStr          :S EE TT B BSS   HHHHHHHT HHHHHHHHHHHHHHHHHHTT    HHHHHHHHHHHT EEEE S  SSS  TT EEEHHHHHHHHHHHHHH SS  :    
ExpBur          :eeebeebeebbeeeebbebbbebeebeebbebbbeebbebbbeeebebbbbbbbbbbbbbbbbbebeeebeeebeeebebbebebbebbeebeeeeeeeb:    

6uu6_D_1    1301:TYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAG------------------------:1376
SecStr          : EEE    THHHHHHSS HHHHHHHS HHHHHHHHHHHT EE   SHHHHHHTT   SSTHHHHHHHHHHHHTT -:    
ExpBur          :eeeeebbbbbebbeebebbbbbbbbbebbebbbebbbeeeebebebbbbbebeeeeebbeebbeebeeeeeeeee-:    


Input Residue Numbers for Focused Sites

ex) 2,15,123