Protein Model on 5d4d_L_1_BA_1 (TEMPLATE: 5d4d )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[3D template]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query F)
1 a FL 1 (N) polymer(polypeptide(L)) [1483 aa] DNA-directed RNA polymerase subunit beta' :RPOC_THET8
2 b BA 1 (M) non-polymer(CTP) CYTIDINE-5'-TRIPHOSPHATE 1029R
FOCUSED TEMPLATE
MODEL[1] TEMPLATE:5d4d_L_1
5d4d_L_1       1:XXKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAA: 100
SecStr          :--     EE     HHHHHHH S B  S   B TTT  B TTSTT TTTS  SSTT  SS S  SGGGTT B TTT  B S TTHHHH  EEEEEEEEEE:    
ExpBur          :--eeeeeeeeebebbeebeeebeeebeeeeeeeeeeeebeeebbbbbebbbbeeebebeebebeeeeeeeeebeebebebbeeebbeebebbbebebbbb:    

5d4d_L_1     101:HIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLD: 200
SecStr          : THHHHSSS HHHHHHT  HHHHHHHHTTSSEEEEE TT EETTEE  TT EE HHHHHHHHH  EEEEE  TT   SS TT EE TT BSSSS B SS :    
ExpBur          :bbbbbebeebbbbbbbebeeeebeebbbbeebbbbebeebebeeeebeeeebbbeeebeebeebeeeebebeeeeebebebeeebeeeeebbeebebebe:    

5d4d_L_1     201:GVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEK: 300
SecStr          :EEEEEEEEEEEEEEEEEEEEEEEEEETTTB   SSB TT EEEE SS EEEE SS EEEEEEE SSSEEEEEEETTEEEEEEEE EEEEE   TT EE T:    
ExpBur          :bbbbbeebebbebbbeeeeebbbbbeeebbeeeeebeeeeebbebeeeeebebeeebebebeebeeebbbbbeeeeeeebebbbbeebeeebeeeeebee:    

5d4d_L_1     301:GQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARV: 400
SecStr          :T EEEEEEEEEE  SS EEEEEEEEEETTEEEEEEEEEEEEEEEEE  TT EE S TT EE TT EEEE SSGGG EE  SSEEEEEEEEEEEEEE EEE:    
ExpBur          :eeebbebeeebebbeebebeebeeeeeeeebbbbbebebeeeeebebeeebebebebeeebeeeeebbbbeeeeeebebeeebbbebebbbbbbbbebee:    

5d4d_L_1     401:YPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVR: 500
SecStr          :EE SS BS  TT EE TT EEEGGGTEE SS EEEEEETTTTEEEEEE    EEE HHHHHHHHHHH  HHHHHHHHHHHTT S HHHHHHHHHHHHHHH:    
ExpBur          :bebeeebebeeeeebeeeeebbbeeebebebebebebbeeeebbbbbebeebebebbbebbbebbeebebeebbeebeeebeeeeeeeebebbeebebbb:    

5d4d_L_1     501:AFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPL: 600
SecStr          :HHHHHT  GGGGEEEEEEE  GGGS EEE TTS EEE THHHHHHHHHHHHHHHHHHHHTT  HHHHHHHHHHHHHHHHHHHSTTTSSS  B TT   B :    
ExpBur          :bbeeeebebbbbbbebbebebbeebeeeeeeeeeeeeebbbebbeebbebbeebeebeeeeeeeeebbebbebbbebbbbbbbbeebeeebeeeeeeeeb:    

5d4d_L_1     601:RSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVV: 700
SecStr          :  HHHHHSSTTSHHHHTTS    SSEEEEEEEE TTS TTEEEEEHHHHHHHTHHHHHHHHHHSTT SSHHHHHHHHHSSTT  THHHHHHHHHSTT  E:    
ExpBur          :ebebebeeeeebebeeeeeeeeeeeeeebebeebeebebeebbbbbebbbebbbeebbebbeeeebbeeeebbeebbeeeeebeeebbebbeebbeeebb:    

5d4d_L_1     701:LLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKK: 800
SecStr          :EEE SS  SGGGEEEEEEEEESSS EEE GGGHHHHT  SSS EEEEE   SHHHHHHHHHHTBGGG  B TTTSSBSS   THHHHHHHHHH     SS:    
ExpBur          :bbbbeeeebebbebbbebebbeeeebebbbbbbebbebeeeebebbbebbeeeeebeebeeeebbbebbbbbbebebbbbbeeebbbbbbebbbeeeeee:    

5d4d_L_1     801:GAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELI: 900
SecStr          :S S EESSHHHHHHHHHHTSS SS  EEETTEEE HHHHH EESSHHHHHHHHHTTSS TTS EEEEETTEEEEE HHHHHHHHHHHHHHT HHHHHHHS:    
ExpBur          :beeeebeeeeebeebeeeeebbbbbebebeeeebbbbeeeeebeebeebbebeeeeebebbbbbbbebeeeebebbbbbbbbbebbbebbeeeebbbebb:    

5d4d_L_1     901:QLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETT:1000
SecStr          : TTS   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT    GGGS   THHHHHHHHHHHHHHHHHHHHHTTSS HHHHHHHHHHHHHHHH:    
ExpBur          :ebeebbeeebbbebbbebbeebeeeebbebbbbbbeebeebbeebeeeeeeeebbebeebeeebeebeeebeebeeeeeeeebeeeebbeebbebbeebb:    

5d4d_L_1    1001:EKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVD:1100
SecStr          :HHHHHHHHHHHHHT TT HHHHHHHHTSS  HHHHHHHHS  B  B TTS B SS B   TTT   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :eebbebbbebbeeeeeebbbbbbbebebeeeeeebbeebbbbbebeeeeeebbeebbebbeeeeeeeebeebbeeeeeeeeeeeeebeeebeebbebbeb:    
Contact         :                            b                                                                       

5d4d_L_1    1101:VTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGV:1200
SecStr          :HHTT EEEES       EEEESEEE SSSSSEEE  HHHHHHHHTT BBSS EEETTEEE TT B  HHHHHHHHHHHHTTS SEEEE  TTT   TTEE:    
ExpBur          :bbbbbbbeeeebebeeebebebbeebeeeeeeeebeeebbbbbbbbbbbbeebebeeeebeeeeebebebbebbbebbeeeebeebbbbbbbbbebeebb:    

5d4d_L_1    1201:CQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTXXXXXXXXXXXXXXXTQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFS:1300
SecStr          :EHHHH EETTTTEE  TT  HHHHHHHHHHGGGGG  ---------------  SHHHHHHHHTT   SSB  B SS EEEEEEE SS EEEEEE SS E:    
ExpBur          :bebbbbbbbbebeebebbbbbbebbbebbbebbeebe---------------eebbebbbbbbbbeebeeebebbeeebebeeeeeeeebbbbbbeeeee:    

5d4d_L_1    1301:KEYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDV:1400
SecStr          :EEEE  SS  BS  TT EE TT BSBSSB  HHHHHHHH HHHHHHHHHHHHHHHHHHTT    HHHHHHHHHHHT EEEEEE TTSS  TT EEEHHHH:    
ExpBur          :eebebeeeeeeebeeeeebebbeebbeebbbbbebbeeebeebbbebbbebbbebbeeeebebbbbbbbbbbbbbbbbbebeeeeebebbebeebbeeeb:    

5d4d_L_1    1401:EALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARK:1500
SecStr          :HHHHHHHHTTT    EEEE    HHHHHHSSS HHHHHTTS HHHHHHHHHHHT EE   SHHHHHHTT   SSGGGSTTTTT     HHHHHHHHHHT-:    
ExpBur          :eebbeebeeeeeeebeeeebbbbbbebbeebebbbbbbbbeebbebbbebbbebeebebebbbbbebeeeeeebeebbeeeeeeeeeeeeeeeeeeeee-:

Input Residue Numbers for Focused Sites

ex) 2,15,123