[pdbjlvh2]Protein Model on 5d4d_D_1_W

Protein Model on 5d4d_D_1_W_1 (TEMPLATE: 5d4d )

CurrentView:HTML5 Change to:[JAVA]
DOWNLOAD:
ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]
MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query F)
1	a	F	D 1 (D)	polymer(polypeptide(L)) [1485 aa]	DNA-directed RNA polymerase subunit beta' :RPOC_THET8
2	b		W 1 (D)	non-polymer(CTP)	CYTIDINE-5'-TRIPHOSPHATE	1029R
FOCUSED TEMPLATE
MODEL[1] TEMPLATE:5d4d_D_1
5d4d_D_1       1:XXKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAA: 100
SecStr          :--     EE     HHHHHHHEEEE      B TTT SB TTSTT TTTT  SBTTB SSSS  SGGGTT B SSS  B S GGGGGT EEEEEEEEEEE:    
ExpBur          :--eeeeeeeeebbbbeebeeebeeebeebeebbeeeeebeebbbbbbebbbbeeebebeebebeeeeeeeeebeebebebbeeebbeebebbbebebbbb:    

5d4d_D_1     101:HIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLD: 200
SecStr          : THHHHSSS HHHHHHT  HHHHHHHHTTSSEEEEE TT EETTEE  TT EE HHHHHHHHH  EEEEE  TT   SS TT EE TT EEETTEE SS :    
ExpBur          :bbbbbebeebbbbbbbebeeeebeebbbbeebbbbebeebebeeeebeeeebbbbeebeebeebeeeebebeeeeebebebeeebeeeeebbeebebebe:    

5d4d_D_1     201:GVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEK: 300
SecStr          :EEEEEEEEEEEEEEEEEEEEEEEEEETTTB   SSB TT EEEE SS EEEE SS EEEEEEE SSSEEEEEEETTEEEEEEEE EEEEE   TT EE T:    
ExpBur          :bbbbbeebebbebbbeeeeebbbbbeeebbeeeeebeeeeebbebeeebebebeeebebebeebeeebbbbbeeeeeeebebbbbeebeeebeeeeebee:    

5d4d_D_1     301:GQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARV: 400
SecStr          :T EEEEEEEEEE  TTEEEEEEEEEEETTEEEEEEEEEEEEEEEEE  TT EE S TTEEE TT EEEE SSGGG EE  SSEEEEEEEEEEEEEE EEE:    
ExpBur          :eeebbebeeebebbeebebeebeeeeeeeebbbbbebebeeeeebebeeebebebeeebebeeeeebbbbeeeeeebebeeebebebebbbbbbbbebee:    

5d4d_D_1     401:YPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVR: 500
SecStr          :EE SS BSS TT EE TT EEEGGGTEE SS EEEEEETTTTEEEEEE    EEE THHHHHHHHHT  HHHHHHHHHHHHTSS HHHHHHHHHHHHHHH:    
ExpBur          :bebeeebebeeeeebeeeeebbbeeebebebebebebbeeeebbbbbebeebebebbbebbbebbeebebeebbeebeeebeeeeeeeebebbebbebbb:    

5d4d_D_1     501:AFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPL: 600
SecStr          :HHHHHT  GGGGEEEEEEE  GGGS EEE TTS EEE HHHHHHHHHHHHHHHHHHHHHTT  HHHHHHHHHHHHHHHHHHHSTTSSSS  B TT   B :    
ExpBur          :bbeeeebebbbbbbebbebebbeebebeeeeeeeeeeebbbebbeebbebbeebeebeeeeeeeeebbebbeebbebbbbbbbbeebeeebeeeeeeeeb:    

5d4d_D_1     601:RSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVV: 700
SecStr          :  HHHHHSSTTSHHHHHTSS   SSEEEEEEEE TTS TTEEEEEHHHHHHHTHHHHHHHHHHSSS SSHHHHHHHHHSGGG  HHHHHHHHHHTTT  E:    
ExpBur          :ebebebeeeeebebeeeeeeeeeeeeeebebeebeebebeebbbbbebbbebbbeebbeebeeeebbeeeebbeebbeeeeebeeebbebbeebbeebbb:    

5d4d_D_1     701:LLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKK: 800
SecStr          :EEE SS  SGGGEEEEEEEEESSS EEE GGGHHHHT  TTT EEEEE   SHHHHHHHHHTTBGGG  B TTT SBSS   THHHHHHHHHH     SS:    
ExpBur          :bbbbeeeebebbebbbebebbeeeebebbbbbbebbebeeeebebbbebbeeeeebeebeeeebbbebbbbbbebebbbbbeeebbbbbbebbbeeeeee:    

5d4d_D_1     801:GAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELI: 900
SecStr          :S S EESSHHHHHHHHHTTSS SSSEEEETTEEEEHHHHH EESSHHHHHHHHHTTSS TTS EEEEETTEEEEE HHHHHHHHHHHHHHT HHHHHHHS:    
ExpBur          :beeeebeeeeebeebeeeeebbbbbebebeeeebbbbeeebebeebeebbebbeeeebebbbbbbbebeeeebebbbbbbbbbebbbebbeeeebbbebb:    

5d4d_D_1     901:QLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETT:1000
SecStr          : TTS   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT     GGGS   THHHHHHHHHHHHHHHHHHHHHTTSS HHHHHHHHHHHHHHHH:    
ExpBur          :ebeebbeeebbbebbbebbeebebeebbebbbbbbeebeebbeebeeeeeeeebbebeebeeebeebeeeeeebeebeeeeebeeeebbeebbebbeebb:    

5d4d_D_1    1001:EKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVD:1100
SecStr          :HHHHHHHHHHHHHH TT HHHHHHHHTSS  HHHHHHHHS  B  B TTS B SS B   TTT   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :eebbebbbebbeeeeeebbbbbbbebebeeeeeebbeebbbbbbbeeeeeebbeebbebbeeeebeeebeebbeeeeeeeeeeeeebeeebeebbebbeb:    
Contact         :                            b                                                                       

5d4d_D_1    1101:VTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGV:1200
SecStr          :HHTT EEEES       EEEESEEE TT SSEEE  HHHHHHHHTT BBSS EEETTEEE TT B  HHHHHHHHHHHHTTS SEEEE  TTT   TTEE:    
ExpBur          :bbbbbbbeeeebebeeebebebbeeeeeeeeeeebeeebbbbbbbbbbbbeebebeeeebeeeebbebebbebbbebbeeeebeebbbbbbbbbebeebb:    

5d4d_D_1    1201:CQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTXXXXXXXXXXXXXXXTQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFS:1300
SecStr          :EHHHH EETTTTEE  TT  HHHHHHHHHHGGGGG  ---------------  HHHHHHHHHTT   SSB  B SS EEEEEEE SS EEEEEE SS E:    
ExpBur          :beebbbbbbbebeebebbbbbbebbbbbbbebbeebe---------------eebbebbbbbbbbeebeeebebbeeebebeeeeeeeebbbbbeeeeee:    

5d4d_D_1    1301:KEYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDV:1400
SecStr          :EEEEE TT  BS  SS EE TT BSBSSB  HHHHHHHH HHHHHHHHHHHHHHHHHHTT    HHHHHHHHHHHT EEEEEE TTSS  TT EEEHHHH:    
ExpBur          :eebebeeeeeeebeeeeebebbeebbeebbbbeebbeeebeebbbebbbebbbebbeeeebebbbbbbbbbbbbbbbbbebeeeeebebbebeebbeeeb:    

5d4d_D_1    1401:EALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARK:1500
SecStr          :HHHHHHHHHHT    EEEE    HHHHHHT S HHHHHTTS HHHHHHHHHHHT EE   SHHHHHHHT   SSGGG TTTTT     HHHHHHHHHHTT:    
ExpBur          :eeebeebeeeeeeebeeeebbbbbbebbeebebbbbbbbbeebbebbbebbbebeebebebbbbbebeeeeeebeebbeeeeeeeeeeeeeeeeeeeeee:    

5d4d_D_1    1501:EA--------------------------------------------------------------------------------------------------:1502
SecStr          :T-:    
ExpBur          :e-:
Protein Model on 5d4d_D_1_W_1 (TEMPLATE: 5d4d )

Input Residue Numbers for Focused Sites
