Protein Model on 5d4d_C_1_W_1 (TEMPLATE: 5d4d )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query F)
1 a FC 1 (C) polymer(polypeptide(L)) [1108 aa] DNA-directed RNA polymerase subunit beta :RPOB_THET8
2 b W 1 (D) non-polymer(CTP) CYTIDINE-5'-TRIPHOSPHATE 878S 879R
FOCUSED TEMPLATE
MODEL[1] TEMPLATE:5d4d_C_1
5d4d_C_1       1:MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEXXXXXXGLVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQL: 100
SecStr          : EEEE  S   SS    TTHHHHHHHHHHH TTS GGG  SSHHHHHHHHH  B  ------  EEEEEEEEE   SS HHHHHHTT   EEEEEEEEEE:    
ExpBur          :eeeeebeebeebeebbebbebbeebbeebbbeeeeeeebeeebbbbbbebbbebee------eebbebeebebbeeeeeeeebeeeeebbebbbebebeb:    

5d4d_C_1     101:IHKDTGLIKEDEVFLGHIPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVL: 200
SecStr          :EETTTTEEEEEEEEEEEEE   TTS EEETTEEEEE EEEEE SEEEEEE SSSTT EEEEEE STTSS  EEEEE TTS EEEEETTEEEEHHHHHHHT:    
ExpBur          :eeeeeeeeeeeebebbebbbbbebbbbbbebebbbbbbbbbebbbbbbeebeeeeeeebbbbbbbbebebebebbbbeeeebbbebeeeebebbbbbbbb:    

5d4d_C_1     201:GYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKD: 300
SecStr          :T  HHHHHHHHTTSTTHHHHH  HHHHHS HHHHHHHHHHHHSTTS   HHHHHHHHHHHHT TTT    HHHHHHHHHHHT   SSSSSEEEETTEEEE:    
ExpBur          :ebeeeebeeebeebeebbebbbeeebbebeeeebbeebbeebeeeeeeeeeebbebbebbbbbeeebbbbebbbebbbebbeeebeeebbbeeeeeebeb:    

5d4d_C_1     301:EVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMXXXXSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNP: 400
SecStr          :SSHHHHHHHHHHHHHT SS     TTSTTTEEEE HHHHHHHHHHHHHHHHHHHHHHHH  ----   HHHH   HHHHHHHHHHHHH SSEEE   SSH:    
ExpBur          :bbbbbbbebbbbbbeeeeebeebeebbbbbbbbbbbbebbbbebbebbeebbebbeeebee----eeebeebbebeebbebbeebbbebebbeebebbbb:    

5d4d_C_1     401:LSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVTDEVVYMTATEEDRYTIAQAN: 500
SecStr          :HHHHHHHTEEES STTS  TTS  HHHHS  GGGTTTB SS   SSTTBTTEEEB TT EE TTS EEEEEEEEETTEEEEEEEEE HHHHTTSEEE TT:    
ExpBur          :bbbbbbbbbbbbbbeeeeeeeebeeebeeebebbebbbbebbbeeeeeebbbbbbbbbbeeeeebbbebbbbebeebebeeeeeebbbeebbebbbbebe:    

5d4d_C_1     501:TPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEED: 600
SecStr          :  EETTEE  SSEEEEETTEEEEE GGG  EEES SGGGS TTGGG TTGGGB HHHHHHHHHHGGGB   TT B  SEE S HHHHHHHTT SEE SSS:    
ExpBur          :beeeeeebeeeebebbeeeeeeebbbeebebbbbbbbbbbbbbbbbbbbbeebeeebbbbbbbbbbebbbbeebbbbbbbbebbeebbebbebbbbbeee:    

5d4d_C_1     601:GEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFY: 700
SecStr          :EEEEEE SSEEEEEETT  EEEEE   SEE TTSBEE  EE   TT EE TT EEEE TTEETTEE  BEEEEEEES  TTTTGGG EEEETHHHHTTTT:    
ExpBur          :bebeeeeeeebbbebeeeeebebebeeeeebbbbbbbbbbeebeeeeebeeeebbbbbbbbeebbbbbbbbbbbbbbebeeebeeebbbbbeebbeeebb:    

5d4d_C_1     701:TSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIV: 800
SecStr          : EEEEEEEEEEEEB SS B EE S  TT  HHHHTTB TTSBB TT EE TT EEE EEEE  S    HHHHHHHHHHT    SEEE  EE  TT  EEE:    
ExpBur          :bbbbbeebebebeeeeeeebebeeebbeeeeeebebbeeebbbeeebebeeeebbbbbbbeeeeeeeeeeeeeeeeeeeeeeeebeeebbebeeeebbeb:    

5d4d_C_1     801:VRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQR: 900
SecStr          :EEEEEEETTSTT   STTEEEEEEEEEEEEE   TT EEE TTS EEEEEEEE GGGS B TTS B SEEE GGGSTTTTBTHHHHHHHHHHHHHHHTEE:    
ExpBur          :eeebeeeeeeeeeeeeeebebbbbbbbbbebebeeebebbbbbbbebebeeebeeeebbebeeeeebbbbbbeebbeebebebbbbbbbbbbbbebeebb:    
Contact         :                                                                             bb                     

5d4d_C_1     901:YISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHM:1000
SecStr          :EE  SSSS  HHHHHHHHHHHHHHHHHHHHHTT    HHHHHHHHHHHHHTSS TTS HHHHHHHHHTTTEE  B TTTSSB SS EEEEEEEEEEBS  :    
ExpBur          :bbbbbebbbeeeebeebbbebbeebbeebeeeeeeeeeebeebbeebeeeeebeeeeeeeebbebbbeebebbbbbeeeeebeeebbbbbbbbbbbbeeb:    

5d4d_C_1    1001:VEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPESFRVLVKELQALALDVQ:1100
SecStr          :HHHH    SS  B TTT  B  SGGGT      HHHHHHHHHHT HHHHHHHHTTTTT HHHHHHHHHHHHHT         HHHHHHHHHHHHTT    :    
ExpBur          :eeeeeeebeeeeeeeeeeeeeeeeeeebeeeebeeebeebeeeeeeeebeeeebbebbbeebbeebeebeeeeeeeeebeeeeeebbebeeeeeeeeeee:    

5d4d_C_1    1101:TLDEKDNPVDIFEGLASK----------------------------------------------------------------------------------:1118
SecStr          : B TTS B  TTTTTT -:    
ExpBur          :eeeeeeeeeebbeeeee-:    


Input Residue Numbers for Focused Sites

ex) 2,15,123