[pdbjlvh2]Protein Model on 2nvz_D_1_S

Protein Model on 2nvz_D_1_S_1 (TEMPLATE: 2nvz )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]
MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query F)
1	a	F	D 1 (A)	polymer(polypeptide(L)) [1398 aa]	DNA-directed RNA polymerase II largest subunit :RPB1_YEAST
2	b		S 1 (B)	non-polymer(UTP)	URIDINE 5'-TRIPHOSPHATE	446R 479N 481D 483D 485D 827T 1078Q 1082N 1085H
FOCUSED TEMPLATE
MODEL[1] TEMPLATE:2nvz_D_1
2nvz_D_1       1:XVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIK: 100
SecStr          :-  S   S        EE     HHHHHHH         SS SSS SS BTTBS SSS  SSS   SSS  S TTT     EEEEEEEEE  GGGHHHHH:    
ExpBur          :-eeeeeeeeeeeeeeebebebebbeebeeeeebebeeeebbeeeeeeeebebbbeeebbbbeeeeeeeebeebeeebeeeebbbebeebbbbbebbebbe:    

2nvz_D_1     101:KVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEXXXXXLVSRGGCGNTQPTIRKDGLKLVGSWXXXXXXXXXXXXXLR: 200
SecStr          :HHHTTB TTT  BSS TTSTTSTTTTT SSSSTTHHHHGGGTSS  S  SS    -----       SS   EEEE SSSEEEE -------------  :    
ExpBur          :ebbbbbbbeebebbbeeeeeebeebeeeeeebebbeebeeebeeeeebeeebeee-----eeeeeeeeeebbebeeeeeebebee-------------ee:    

2nvz_D_1     201:VLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHV: 300
SecStr          :EE HHHHHHHHHS  THHHHHSS  SSS  TTTSSEEEEEE  GGGS    SSSS     TTHHHHHHHHHHHHTTTTTSSS    SS  TTHHHHHHHH:    
ExpBur          :eeebeebbebbeebeeebbebbbbeeeebebbbbbbbbbbbbbbeebebeeeeeeeeeeeebbebbbebbebbeebeeeeeeeeeeeeeeeeeeebbebb:    

2nvz_D_1     301:ATYMDNDIAGQPQAXXXXGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHP: 400
SecStr          :HHTT   SSS    ----     TTHHHHSSSSSHHHHHTSS   SSEEEEEEEE TTS TTEEB BHHHHTT  B  B  TTTHHHHHHHHHHTTTSSS:    
ExpBur          :bbbbbbeeeeeeee----eeebbbebeeeebeebebeeeeeeeeeeeebeeebbeeeebbbebbbbbeebbeebbbbbebeeebbeebbebbebbbeeee:    

2nvz_D_1     401:GAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAE: 500
SecStr          : B  EE SS  EE SSSSSSTT     SS B  B   SS EEEEE SS  SSTTEEEEEE  BSSS EEE TTSSTTTT  TTT EEEEE   SHHHHHH:    
ExpBur          :bbbebbeeeeeebebeeeeeeeebebeeebebbbbbeeebbbbbbbeeebbebbebbbebebbeeebbebbebbbebbebeeeebebbbebbeeeeebee:    
Contact         :                                             b                                b b b b               

2nvz_D_1     501:LSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSP: 600
SecStr          :HHTTTBGGGGSS TTTSS S    SHHHHHHHHHH TT EEEHHHHHHHHTTSTT  S     S  SSS EEEHHHHHTTTS TT  B    TT  SS T:    
ExpBur          :beeeebbbebbbbbbbbebebbbbeebbbbbbbbbeeebebeeeebeebbeebeeeeeeebebebeeeeebbbbbbbbbebbeeebbbeeeeeebeeebe:    

2nvz_D_1     601:KDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQAN: 700
SecStr          :T  SEEEETTEEEEE   TTTTSSSSSSHHHHHHHSS HHHHHHHHHHHHHHHHHHHHHH     GGGT   HHHHHHHHHHHHHHHHTHHHHHHHHTS :    
ExpBur          :ebebbebeebebebbbbbeebbbeebebbbbbbbbbebeeebbebbbbbbbbbbbbbeeeeeeeeeebbebeeebeeebeebbeebeeebeebbeeeeee:    

2nvz_D_1     701:LLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFV: 800
SecStr          :     SSS SSSSSTTHHHHHHHHHHHHHHHHTTSSS TT HHHHHHHTTSS  HHHHHHHHT  EE EETTEES   BTTBS TTS S   SHHHHTEE:    
ExpBur          :eeeeeebeeeeebbbeebeeebeebbeebbeebeebbeeebebbbbeebebeeeeeebbbebbbbbbbbbeeebbeeeeeeebbeebeeeeebbebbbbb:    

2nvz_D_1     801:ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVD: 900
SecStr          : S SSS   HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT EE TTS EE SSS EEESSGGGT B GGGEEEEE TTSSS HHHHHHHH   :    
ExpBur          :eebeeeebeeebeebbeebeeebeebeeeebeebeebbebbebebbbbbbeeebbbebbeeeebbebbbebbbbbbbbbebebebbeeeeeebeeebebb:    
Contact         :                          b                                                                         

2nvz_D_1     901:LLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVL:1000
SecStr          :SS STTS  TTT TTHHHHSS STTTTTHHHHHHHHHHHHHHHHHH SS   EEEEES HHHHHHHHHHHS   SSS     HHHHHHHHHHHTTS  SS:    
ExpBur          :beeeeebbeeebbebbeebeeeeebbeebeebbeebeebbeebbeebeebebeeebbbbbebbbbbbeeeeeeeeeeebebebeebbebbeebeeebebb:    

2nvz_D_1    1001:RGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPR:1100
SecStr          :  SSHHHHHHHHHHHHHHHHHHHHHS HHHHBTTSB  HHHHHHHHHHHHHHHTTSB  TT BHHHHHSSTTHHHHHHHSSS   SSS   SSSSSSHHH:    
ExpBur          :eeeeeeeeeebeebbeebbbbbbbbbbbbbbbeebebeeebbeebbeebeebbeebbbeebebbbebbbbbbbbbbbbebeebeeebbeebebbeebbbb:    
Contact         :                                                                             b   b  b               

2nvz_D_1    1101:LKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLXXXXXXXXXXQQSPWLLRLELDRA:1200
SecStr          :HHHHHHT SS SS EEEEEB TTSSSTTSTHHHHHTTTS  BSGGG S         SS   SSS  SS S     ----------   S        HH:    
ExpBur          :bebbbeebeebeeeebbbebeeeeeeeeebbeebbbebbbbbbeebbeeeeeeebeeeeebeeeebeeeeeeeeee----------eebeebbbbebeee:    

2nvz_D_1    1201:AMNDKDLTMGQVGERIKQTFKNDLFVIWSEDXXXXLIIRCRVVXXXXXXXXXXAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVK:1300
SecStr          :HHTTTT  HHHHHHHTGGG SSS   EE   ----  EE    ----------   HHHHHHHHHHHHTT BSSS TT   EEEEEEEEEEE TTSSEEE:    
ExpBur          :bbeeeebebeebbeebbeeeeeebebbeeee----ebbbbbbe----------eeeeeebeeeeeebbeebbbbebeebeebbeeeeeeebeeeebebee:    

2nvz_D_1    1301:EPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRC:1400
SecStr          :EEEEEEEEE   HHHHTT SSB TTT EES HHHHHHHH HHHHHHHHHHHHHHHHSSSS    THHHHHHHHHHHTTSS   SSTTTTTTSS  HHHHH:    
ExpBur          :eebbbbbbebbbbeebeebebbbeebbebbbbbebeeeeeeeebbebbbebbeebbbeeeebbbebbbbbbbbebbeeeebbbbbeebbbebebbbbbbb:    

2nvz_D_1    1401:SFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMI-------------------------------------------------------:1445
SecStr          :TSSS HHHHHHHHHTT EE   SHHHHHHTTS  SSSTTSS   -:    
ExpBur          :bbeebbebeeebbbbbbebebebbbbbebeeeebeeeebeeeee-:
Protein Model on 2nvz_D_1_S_1 (TEMPLATE: 2nvz )

Input Residue Numbers for Focused Sites
