Protein Model on 1twf_B_1_P_1 (TEMPLATE: 1twf )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[3D template]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1] [assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query F)
1 a FB 1 (B) polymer(polypeptide(L)) [1094 aa] DNA-directed RNA polymerase II 140 kDa polypeptide :RPB2_YEAST
2 b P 1 (B) non-polymer(UTP) URIDINE 5'-TRIPHOSPHATE 766R 836E 986Q 987K 1020R
FOCUSED TEMPLATE
MODEL[1] TEMPLATE:1twf_B_1
1twf_B_1       1:XXXXXXXXXXXXXXXXXFEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLIXXXXXXXXXXXXXXXXXXEISFGKIYVTKP: 100
SecStr          :-----------------   TT    TTHHHHHHHHHHHHHTT HHHHHHHHHHHHTHHHHHHHTT B  ------------------  EE   EEEEE:    
ExpBur          :-----------------eeeeeeebeeebbbbbbbbbbeebebbbbbbebbbebbeeebeebbebebebe------------------ebbbbebeeeeb:    

1twf_B_1     101:MVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEXXXXXXXXXXXXXXXXXXXXXXXXXKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMG: 200
SecStr          :EE  SSS  EE  HHHHHHTT   EEEEE  EE     -------------------------  EEEEEE  TTSTTSGGGT  HHHHHHTT  TT   :    
ExpBur          :bbeeeeeeeeebebbebbbbbbbbbbbbebebeeeeee-------------------------eeebbbbbbbbebebbbbeebeeeebeeeebbeebbb:    

1twf_B_1     201:GYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEH: 300
SecStr          : SEEETTEEEEE EEEEE SS  EEEE  TTSSEEEEEEEE   SSS     EEEEEEES SS SS  EEEE TT SS EEHHHHHHHTT  SHHHHHHH:    
ExpBur          :bbbbbebebbbbbbbbeebebbbbbbeeeeeeebbbbbebebeeeeeeeeebebebbbebeeeeeebbbebebeebeebbbbbbbbbbbebeeeeebeeb:    

1twf_B_1     301:ICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDH: 400
SecStr          :H   TT HHHHHHHHHHHHHTTT  SHHHHHHHHHHTTS TTS HHHHHHHHHHHHHHTSSTTT  SSS HHHHHHHHHHHHHHHHHHHTTSS    TT :    
ExpBur          :bbbeeebeebeebbebbbeebeebeeeeebbbebbeebeeeeeeeeebbeebeebbeeebbbbbbeeeeeeebbbbbbbbbbbbbbbbbbeeeeeeeebb:    

1twf_B_1     401:FGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEXXXXXXXXLAINAKTITSGLKYALATGNWGXXXXXXXXXAGVSQVLNRYTYSSTLSHLRRTNT: 500
SecStr          :GGGEEEE HHHHHHHHHHHHHHHHHHHHHHHHHS   --------    THHHHHHHHHHHHH    ---------   EEE   SSHHHHHHHHTEEE :    
ExpBur          :bbebbbbbbbebbbebbbebbeebbeebeeeeeeeee--------eeeebebbbebbeebbeebebe---------eebbeebbbebbbbbbbbbbbbeb:    

1twf_B_1     501:PIXXXXXXAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETL: 600
SecStr          :  ------  TTS  GGGTTTB SS   SGGGBTTEEEB TT EE      HHHHHHHHHTT EEGGG  GGG TT EEEEETTEEEEEES HHHHHHHH:    
ExpBur          :ee------eeeeeebebbebbbbebbeeeeeeebbbbbbbbbbbbbeeeebeebeeebeeeebeebeebebeebeebbbbbbbbbbbbbbeebeebbebb:    

1twf_B_1     601:RTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDXXXXXXXXXEYTWSSLLNEGLVEYIDAEEEES: 700
SecStr          :HHHHHHTSS TT EEEEETTTTEEEEE  S  EEEEEEEEE   TTSS EES  HHHHHHHHHHHH  ---------   HHHHHHTTSEEEEEHHHHTT:    
ExpBur          :eebbbeeebeebbbbbeeeeeebbebbbbebbbbbbbbbbeeebeeeeebbebbebebeebeebeeee---------ebebebbbeebbbbbbbbbbbee:    

1twf_B_1     701:ILIAMQPEDLEPXXXXXXXXXDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQ: 800
SecStr          :  EESSGGGG  ---------   TTS        S   EE S GGGGS TTGGGSSSGGGS HHHHHHHHHHGGGB B S TTTTT   SEEEEESS  :    
ExpBur          :beebeebebbee---------eeeeeeeeeeeeeeeebebbbbbbbbbbbbbbbbbbbbeebeeebbbebbebbbebbbbbbebeeebbeeebbbbeeee:    
Contact         :                                                                 b                                  

1twf_B_1     801:KPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA: 900
SecStr          :  SEE TTHHHHTTTTS   EEEEEEE  SSSTTTTTEEEEEHHHHHTTTT EEEEEEEEE    S TT   EES    SSS B  SS GGG  TTSB  :    
ExpBur          :ebebbbbbbebbebeebbbbbbbebbbbebeeebeeebbbbbebbbeebbbebbbbbbbebebeeeeeeeebebeebeeeeeeeeeeeebeebeeebbbe:    
Contact         :                                   b                                                                

1twf_B_1     901:PGVRVSGEDVIIGKTTPISXXXXXXXXXXXXXSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMP:1000
SecStr          :TT EE TT EEE EE    -------------  BB  EE  TT  EEEEEEEEEE SSS EEEEEEEEEEE   TT EEE TTS EEEEEEEE TTTS :    
ExpBur          :eeeebeeebbbbbbbbeee-------------eeeeebeebeeebebbbbeebebebbeeeebbbbbbebebebeeebbbbbbbbbebebebebeeeebb:    
Contact         :                                                                                     bb             

1twf_B_1    1001:FTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVD:1100
SecStr          :EETTS   SEEE GGGSTTTT HHHHHHHHHHHHHHHH S EE  SSSS  HHHHHHHHHTTTS TTSEE EE TTT  B SS EEEEEEEEEEBSS GG:    
ExpBur          :ebeeeebbbbbbbeebbeeeebebbebbbbbbbbbeeeeeebebbbebeebeeebbeebeeeebeeebebebeeeeeeeeeeeebbbbbbbbbbbeebee:    
Contact         :                   b                                                                                

1twf_B_1    1101:DKIHARARGPXXXXXXXXXXXXXXXXGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAA:1200
SecStr          :GT        ----------------     HHHHHHHHHHT HHHHHHHH  SS   EEEEESSS SS  EEETTTTEEEBTTTTBSSSEEEEE  HHH:    
ExpBur          :eeeeeeeeee----------------eeeeeeeeeeeeeeeeeeeebeeeeeeeeeeeebbbbbebbbbebeeeeeeeeeebeeeebeeebeebebeeeb:    

1twf_B_1    1201:KLLFQELMAMNITPRLYTDRSRDF----------------------------------------------------------------------------:1224
SecStr          :HHHHHHHHHTT      S SS  -:    
ExpBur          :beeeeeeeeeeeebeeeeeeeee-:    


Input Residue Numbers for Focused Sites

ex) 2,15,123