[pdbjlvh2]Protein Model on 8dnt_I_1_G

Protein Model on 8dnt_I_1_G_1 (TEMPLATE: 8dnt )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAA_HUMAN)	I 1 (K)	polymer(polypeptide(L)) [276 aa]	MHC class I antigen alpha chain :U5YKE0_HUMAN
2	b		G 1 (I)	polymer(polypeptide(L)) [242 aa]	T-cell receptor beta chain	89R 96Q (identity: 100.0 %/93.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8dnt_I_1 identity=93.1%

queryA        25:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 124
                :************************************************************* *** *** *** ******************** * ***:
8dnt_I_1       2:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYG: 101
SecStr          :  EEEEEEEEEE  SSS S EEEEEEEETTEEEEEEESSSSS S EE SSSSTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  SS   EEEEEEE:    
ExpBur          :eebbbebebebeeeeeeeeeebebbbebbebebbebebeeeeeebeeebebbeebeeebbeebbeebeebbeebeeebeebeeeeeeeeeeebebebbbb:    
Contact         :                                                                b      b                            

queryA       125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 224
                :****** ****** * ********** ************** ** ****** ******** ********************** ********  ******:
8dnt_I_1     102:CDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT: 201
SecStr          :EEE SSSSEEEEEEEEEESSSEEEEE TTSSS  B SSSSHHHHHHHHHHT HHHHHHHTTTHHHHHHHHHHHHHSSSSS     EEEEEEEESSSSEEE:    
ExpBur          :bebbeebeeeebbbebbbeeeebbbbeeebeebeeeeebbeebeeeeeeeebbeebeeebebebbeebeebbeebeeebebeeebeeebeeeeeeeeebb:    

queryA       225:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE: 299
                :****** ********************************************* **********************:
8dnt_I_1     202:LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE: 276
SecStr          :EEEEEESBSSS EEEEEEETTEEE SSEEE   EE SSS EE EEEEEEETTGGGTEEEEEEESS SS EEEE  :    
ExpBur          :bebebbebbbbebebebbeeeeebeeeeeeeeeeeeeeebbeebbbbbbeeeebeebbbebebeebeeeeebeee:

Protein Model on 8dnt_I_1_G_1 (TEMPLATE: 8dnt )

Input Residue Numbers for Focused Sites