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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(HLAA_HUMAN) | F 1 (F) | polymer(polypeptide(L)) [276 aa] | MHC class I antigen :A0A5B8RNS7_HUMAN | |
2 | b | H 1 (H) | polymer(polypeptide(L)) [9 aa] | Spike protein S1 :SPIKE_SARS2 | 29M 31Y 33F 83Y 87E 90N(K) 91V 93A 94Q(H) 97T 100V 101D 104T 105L 108Y 121I(R) 123Y 140D(Y) 167T 170K 171W 176E(V) 179Q 180L 183Y 191W 195Y (identity: 81.5 %/93.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7pbe_F_1 identity=93.1% |
queryA 25:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 124 :************************************************************* *** *** *** ******************** * ***: 7pbe_F_1 1:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYG: 100 SecStr : EEEEEEEEEEEETTTEEEEEEEEEEETTEEEEEEESSSSS S EE SSSSTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT TTS EEEEEEE: ExpBur :eebebebebebebeeeeeebebebbbebbebebbbbbeeeeeeebbeebebbeebeeebbeebbeebeebeeebeeebeebeeeeeeeeeeebebebbbb: Contact : b b b b b bb bb b bb bb b b b queryA 125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 224 :****** ****** * ********** ************** ** ****** ******** ********************** ******** ******: 7pbe_F_1 101:CDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT: 200 SecStr :EEE TTS EEEEEEEETTEEEEEE TTSS EEE SHHHHHHHHHHHHTTHHHHHHHHHTTHHHHHHHHHHHHHTTTTS EEEEEEE SSSS EE: ExpBur :bbbbeeeeeeebbbebbbeeeebbbbeeebeebebeeebbeebbeeeeeeeebeebbeebebebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb: Contact : b b bb b bb b b b queryA 225:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE: 299 :****** ********************************************* **********************: 7pbe_F_1 201:LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE: 275 SecStr :EEEEEEEESSS EEEEEESSSB TT EE EE SSS EEEEEEEEE TT TTSEEEEEE TT SS EEEES : ExpBur :bebbbeebbbbebebebeeeeeeeeeeeeeeeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeeeeee: |