[pdbjlvh2]Protein Model on 5d4d_K_1_JA

Protein Model on 5d4d_K_1_JA_1 (TEMPLATE: 5d4d )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query F)
1	a	F	K 1 (M)	polymer(polypeptide(L)) [1091 aa]	DNA-directed RNA polymerase subunit beta :RPOB_THET8
2	b		JA 1 (R)	non-polymer(A)	ADENOSINE-5'-MONOPHOSPHATE	567Q 838K 999H

FOCUSED TEMPLATE

MODEL[1] TEMPLATE:5d4d_K_1

5d4d_K_1       1:MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEXXXXXXXGLVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARXXX: 100
SecStr          :  EEE  S   SS    TTHHHHHHHHHHH TTS TTT  STTHHHHHHHH SB -------   B    EEE   SS HHHHHHHT   EEEEEE ---:    
ExpBur          :eeeeebeeeeebbebbebbbbbeebbeebbbeeeeeeebeeebbbbbbebbbebe-------eeebebeebebbeeeeeeeebeeeeebbebbbebe---:    

5d4d_K_1     101:XXXXXXXXXXDEVFLGHIPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVL: 200
SecStr          :----------  EEEEEEE B TTS EEETTEEEEE EEEEE  EEEEEE SSSTT EEEEEE STTSS  EEEEE TTS EEEEETTEEEETHHHHHHT:    
ExpBur          :----------eebebbebbbbbebbbbbbebbbbbbbbbbbebbbbbbeebeeeeeeebbbbbbbeebebebebbbbeeeebbbebeeeebebbbbbbbb:    

5d4d_K_1     201:GYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKD: 300
SecStr          :T  HHHHHHHHTTSHHHHHTT  HHHHTS HHHHHHHHHHHHSTTS   HHHHHHHHHHHHT TTTS   HHHHHHHHHHHT   SSSSSEEEETTEEEE:    
ExpBur          :ebeeebbeeebeebeebbebbeeeebbeeeeeebbeebbeebeeeeeeeeeebbeebebbbbbeeebbbbebbbebbbebbeeebeeebbbeeeeeebeb:    

5d4d_K_1     301:EVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLXXXXXXXTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNP: 400
SecStr          :SSHHHHHHHHHHHHHT TT     TTSTTTEEEE HHHHHHHHHHHHHHHHHHHHHHHT ------- HHHH   HHHHHHHHHHHHH SSEEE   SSH:    
ExpBur          :bbbbbbbebbbbbbeeeeebeebeebbbbbbbbbbbbebbbbebbebbeebbebbeeeee-------eeeebbebeebbebbeebbeebebbeebbbbbb:    

5d4d_K_1     401:LSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVTDEVVYMTATEEDRYTIAQAN: 500
SecStr          :HHHHHHHTEEES STTS  TTS  STTTS  GGGTTTB SS S SSTTTTTSEEB SS EE SSS EEEEEEEEETTEEEEEEEEE HHHHHTSEEE TT:    
ExpBur          :bbbbbbbbbbbbbbeeeeeeeebeeebeeebebbebbbbebbbeeeeeebbbbbbbbbbebbeebbbebbbbebeebebeeeebebbbeebbebbbbebe:    

5d4d_K_1     501:TPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEED: 600
SecStr          :  EETTEE  SSEEEEETTEEEEE GGG  EEES GGGGS HHHHT TTGGGB HHHHHHHHHHHTTB   TT B  SEE S HHHHHHHTT SEE SSS:    
ExpBur          :beeeeeebeeeebebbeeeeeeebebeebebbbbbbbbbbbbbbbbbbbbeebeeebbbbbbbbbbebbbbeebbbbbbbbebbeebbebbebbebbeee:    
Contact         :                                                                  b                                 

5d4d_K_1     601:GEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFY: 700
SecStr          :EEEEEE SSEEEEEETT  EEEEE   SEE TTSBEE  EE   TT EE TT EEEE TTEETTEE  BEEEEEEES  TTTTGGG EEEETHHHHTTTT:    
ExpBur          :bebeeeeeeebbbebeeeeebebebeeeeebbbbbbbbbbeebeeeeebeeeeebbbbbbbeebbbbbbbbbbbbbbebeeebeeebbbbbeebeeeebb:    

5d4d_K_1     701:TSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIV: 800
SecStr          : EEEEEEEEEEEE  TT   EE S  TT  HHHHTTB TTSBB TT EE TT EEE EEEE       HHHHHHHHHHS    SEEE  EE  TT  EEE:    
ExpBur          :bbbbbeebebebeeeeeeebebbeebbeeeeeebebbeeebbbeeebebeeeebbbbbbbeeeeeeeeeeeeeeeeeeeeeeeebeeebbebeeeebbeb:    

5d4d_K_1     801:VRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQR: 900
SecStr          :EEEEEEETTBTTB  STTEEEEEEEEEEEEE   TT EEEETTS EEEEEEEE GGGS B TTS B SEEE GGGSTTTTB HHHHHHHHHHHHHHTT E:    
ExpBur          :eeebebeeeeeebebeeebebbbbbbbbbebebeeebbbbbbbbbebebeeebeeeebbebeeeeebbbbbbeebbeebebebbebbbbbbbbbebeebb:    
Contact         :                                     b                                                              

5d4d_K_1     901:YISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHM:1000
SecStr          :EE  SSSS  HHHHHHHHHHHHHHHHHHHHHTT    HHHHHHHHHHHHHTSS TTS HHHHHHHHHHTTEE  B TTTSSB SS EEEEEEEEEEBS  :    
ExpBur          :bbbbbebbbeeeebeebbbebbeebbeebeeeeeeeeeebeebbeebeeeeebeeeeeeeebbebbbeebebbbbbeeeeebeeebbbbbbbbbbbbeeb:    
Contact         :                                                                                                  b 

5d4d_K_1    1001:VEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPESFRVLVKELQALALDVQ:1100
SecStr          :HHHH    SS  B TTT SB  STTTT      HHHHHHHHHHT HHHHHHHHTTTTT HHHHHHHHHHHHTT         HHHHHHHHHHHTTT    :    
ExpBur          :eeeeeeebeeeeeeeeeeeeeeeeeeebeeeebeeebeebeeeeeeeebeeeebbebbbeebbeebeebeeeeeeeeebeeeeeebbebeeeeeeeeeee:    

5d4d_K_1    1101:TLDEKDNPVDIFEGLASK----------------------------------------------------------------------------------:1118
SecStr          : B TTS B  TTTTSS -:    
ExpBur          :eeeeeeeeeebbeeeee-:

Protein Model on 5d4d_K_1_JA_1 (TEMPLATE: 5d4d )

Input Residue Numbers for Focused Sites