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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
FOCUSED SITES | template(5f9f_K auth_asym_id:K) | ||||||
SiteNum | AA | label_ seq_id |
auth_ seq_id |
AA | Sec | Exp/Bur | RelAcc |
923 | M | 693 | 923 | M | e | 51.7 |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(RIGI_HUMAN) | K 1 (K) | polymer(polypeptide(L)) [672 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5f9f_K_1 identity=98.5% |
queryA 242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341 :****************************************************************************************************: 5f9f_K_1 12:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 111 SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHHS TT EEEE SSHHHHHHHHHHHHHHHTTTT EEEE GGG SSS HHHHHHT : ExpBur :eeeebbebbbebbeeeebbbbbbebebeeeebbbbbbbebbeebeeeeebbbbbbbeeeebbeebeeebeeebeeeebebebbbeeebeeeebeebbeeb: queryA 342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441 :****************************************************************************************************: 5f9f_K_1 112:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 211 SecStr :SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS EEEEEES TT SHHHHHHHHHHHHHHTT EEE : ExpBur :bbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbbe: queryA 442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541 :**************************************************** ****************************************: 5f9f_K_1 212:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 311 SecStr : S HHHHHHHS EEEEEE S HHHHHHHHHHHHHHHHHHHS TT -------- SSHHHHHHHHHHHHHHHT SSHHHHHHHHHHHHHH: ExpBur :beeeeeebeeebeeeeeeeeebeebeeeebbebbbebbeebbebbeeebeee--------eebeeeebeeebeebbeebbeeeeeeeeebbebbbbbbbb: queryA 542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641 :****************************************************************************************************: 5f9f_K_1 312:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 411 SecStr :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTS HHHHHHHHHHHHSHHHHHHHHT TT HHHHHHHHHHHHHHHH TT EEEE S HHHHH: ExpBur :bebbeebbbbbebbeebbbebbbeebeebbeebbeeeeeebbbebbeebeeeeeebeebbeeeebebebbebbbebbeebbeeeeebbbbbbbeeeebbe: queryA 642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741 :****************************************************************************************************: 5f9f_K_1 412:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 511 SecStr :HHHHHHHT GGGTT EEEE TTSS S HHHHHHHHHT STTSS SEEEES SSS S SEEEEES HHHHHHHGGG STT EEEEE: ExpBur :bbeebbeebeebeebebbbbbeeeeeeeeeebeeeebbeeeebbeeebeebbbbbbeeebbbeebeebebbbbbbbeeebbebbbbbbbbbeeebebbbb: queryA 742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841 :******************************************************* *******************************************: 5f9f_K_1 512:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKXXPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 611 SecStr :ES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHS -- B S EEEEETTT EEEEGGGEEEETTTEEEE SHHHHTS: ExpBur :bbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeeeee--eeeeeeebbbbbbbbbbebbebeebbbbeeeebbbbeeebeee: queryA 842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923 :**********************************************************************************: 5f9f_K_1 612:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 693 SecStr :EEEEE SS TT EEEEEEE STTT EEEEEEEETTEEEEEE GGGEEEEESSS EEE SSGGG B EE TT : ExpBur :beebebeeeeeeeebbbebbbebeeeebebebbbbbbbeeeebbbbebebbbbbbeeebebeeeeebeebebbeeebeeeee: |