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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | G 1 (G) | polymer(polypeptide(L)) [669 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
2 | b | CA 1 (G) | non-polymer(ETF) | TRIFLUOROETHANOL | 320R 336Q 337I 340N 341N (identity: 100.0 %/98.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5f9f_G_1 identity=98.0% |
queryA 240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339 :****************************************************************************************************: 5f9f_G_1 10:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 109 SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHTS TT EEEE SSHHHHHHHHHHHHHHHGGGT EEEE GGG TTS HHHHHH: ExpBur :eeeeeebbebbbebbeeeebbbbbbebebeeebbbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebeeebeeeeeebebbbeeebeeeebeeebe: Contact : b bb queryA 340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439 :****************************************************************************************************: 5f9f_G_1 110:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 209 SecStr :T SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS S EEEEEES S SHHHHHHHHHHHHHHTT EE: ExpBur :ebbbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeebbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbbbbbebbbbbb: Contact :bb queryA 440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539 :**************************************************** **************************************: 5f9f_G_1 210:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKXXXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 309 SecStr :E TTHHHHHHHS EEEEEE S HHHHHHHHHHHHHHHHHHHH ---------- SSSHHHHHHHHHHHHHHTT SSHHHHHHHHHHHH: ExpBur :bbbeeeeeebeeebeebebeeeebeebeeeebeebbbebbeebbebbeeeee----------eebeeeebeeebeeebeebbeeeeeeeeebbebbbbbb: queryA 540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639 :****************************************************************************************************: 5f9f_G_1 310:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 409 SecStr :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHH TTS HHHHHHHHHHHHHHHH TT EEEE S HHH: ExpBur :bbbebbeebbbbbebbebbbbebbbeebeebbeebeeeeeeebbeebbeebeebeeebeebbeeeebebebbebbbebbeebbeeeeebbbbbbbeeeeb: queryA 640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739 :****************************************************************************************************: 5f9f_G_1 410:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 509 SecStr :HHHHHHHHHH GGGTT EEE TTSS S HHHHHHHHHSBSTTSSBSEEEE SSS S S SEEEEES HHHHHHHGGG STT EEE: ExpBur :bebbeebbeebeebeebebbbbbeeeeeeeeeebeeeebeebeebbeeeeeebbbbbbebebbbeebeebebbbbbbbeeebbbbbbbbbbbbeeebebb: queryA 740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839 :******************************************************* *****************************************: 5f9f_G_1 510:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXXXPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 609 SecStr :EEESSHHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHH ---- B S EEEEETTT EEEETTTEEEETTTEEEE SSSGG: ExpBur :bbbbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeee----eeeeeeebebbbbbbbbebbebeebbbbeeeebbbeeeebe: queryA 840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922 :***********************************************************************************: 5f9f_G_1 610:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692 SecStr :GTEEEEE SS EETTEEEEEEEEE GGG EEEEEEEETTEEEEEE GGGEEEEETTT EEE SSGGG B B TT : ExpBur :eebeeeebeeeeeeeebebebbbbbeeeebebbbbbebbbeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeee: |