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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
FOCUSED SITES | template(2ykg_A auth_asym_id:A) | ||||||
SiteNum | AA | label_ seq_id |
auth_ seq_id |
AA | Sec | Exp/Bur | RelAcc |
236 | N | 7 | 236 | N | e | 82.4 |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [636 aa] | PROBABLE ATP-DEPENDENT RNA HELICASE DDX58 :DDX58_HUMAN |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:2ykg_A_1 identity=92.1% |
queryA 236:NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE: 335 :**** **************************************************************** *****************************: 2ykg_A_1 7:NLYSXXKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVE: 106 SecStr : TT -- HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHHHHHHS TT EEEE SSHHHHHHHHHHHHHHTTTTT EEEE SSS SSS HH: ExpBur :eeee--eeeebbebbbebbeeeebbbbbbeeebbbbebbbbbbeebbeeeeeeeebbbbbbbeeeeebeebeebbeeebeeeeeebebbbeeeeeeeebe: queryA 336:QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLD: 435 :*********************************************************************************** ****************: 2ykg_A_1 107:QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLD: 206 SecStr :HHHHT SEEEE HHHHHHHHHTTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHTT S EEEEEES SS SHHHHHHHHHHHHHHTT: ExpBur :ebbeebbbbbbbbebbbebbeeeebeebeebbbbbbbebeebeeeeebbebbbebbebeeeeeeeeebbbbbbbeebebeebeeeeebbeebbbbbbbbb: queryA 436:ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC: 535 :*************************************************************************************** *******: 2ykg_A_1 207:ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVXXXXXXDEESRIC: 306 SecStr : EEE TTHHHHHHHS EEEEEE S HHHHHHHHHHHHHHHHHHHHSTTGGGSSS S SSSHHHHHHHHHHHHTS ------ HHHHH: ExpBur :bbbbbebeeeeeebeeeeeeeeeeeeebeebeeeebeebbbebbeebbebbeeebeebeebbeeeebebbeeebeebbeebeeebee------eebeeeb: queryA 536:KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK: 635 :****************************************************************************************************: 2ykg_A_1 307:KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK: 406 SecStr :HHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHTT HHHHHHHHHHHTTHHHHHHHHH GGG HHHHHHHHHHHHHHTT TT EEEE S: ExpBur :ebbebbbbbbeebbbbbbbbebbebebbbeebeebbeebeeeebeebbeebbeebeeebeebbebbeeeebebebbeebbebbeebbeeeeebebbbbbe: queryA 636:TRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG: 735 :************************* ************** ************ **** **: 2ykg_A_1 407:TRALVDALKNWIEGNPKLSFLKPGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGXXXAQCNLVILYEYVXXVIKMXXXXXXXXXRG: 506 SecStr : HHHHHHHHHHHHH TT S EE ----------------------------- S SEEEESS --- SEEEEES -- --------- : ExpBur :eebbbebbbebbeebeebeebebbe-----------------------------eeeeebebeeeeee---eebebbbbbbee--eeee---------ee: queryA 736:SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLG: 835 :******************************************************************************************** *******: 2ykg_A_1 507:SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEDCHYTVLG: 606 SecStr : EEEEEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHT S EEEEESSS EEEEGGGEEEETTTEEEE S: ExpBur :bebbbbbeeeeebeeeeeeeeeeebbeebbeebeeeeeeebeeebeeebeeeeeeeeeeeeeeeeeeeeebbbbbbeeeeebbebeebbbbeeeebbbee: queryA 836:DAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922 :***************************************************************************************: 2ykg_A_1 607:DAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 693 SecStr :TTGGGTEEEEEEEEEEE SS EEEEEEEESSTTT EEEEEEEETTEEEEEE GGGEEEEETTT EEE S GGG S B S : ExpBur :eebeeebeeeebeeeeeeeebebebbbbbeeeebeeebbbbbebeeeebbbbebebbbbbeeeeeeeeeeeebeebebeeeebeeee: |