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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [514 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
2 | b | D 1 (A) | non-polymer(SO4) | SULFATE ION | 506T 507Q 508K 635K (identity: 100.0 %/93.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4on9_A_1 identity=93.1% |
queryA 241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340 :****************************************************************************************************: 4on9_A_1 28:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 127 SecStr : HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHHHHHTS TT EEEE SSHHHHHHHHHHHHHHHHTTT EEEE SS SSS HHHHHHH: ExpBur :eeeeebbeebbeebbeeebbbbbbeeebebebbbbbbbbebbeeeeeeeebbbbbbbeeeebbeebeeebbeebeeeebebebbbeeeeeeeebeebbee: queryA 341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440 :****************************************************************************************************: 4on9_A_1 128:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 227 SecStr : SEEEE HHHHHHHHHHTSS STT SEEEETTGGG STT HHHHHHHHHHHHHHSSS EEEEEES TT SSHHHHHHHHHHHHHHTT SEEE: ExpBur :bbbbbbbbebbbebbeeeebebbeebebbbbbebeebbeeeebbebbbebbebebeeeeeeebbbbbbbeebebeebeeeeebbeebbebbbbbbbbbbb: queryA 441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540 :****************************************************** ************************** *************: 4on9_A_1 228:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLEXXSQIQNREFGTQKYEQWIVTVQKACMVXXXXXKDEESRICKALFL: 327 SecStr : TTHHHHHHHS EEEEEE S HHHHHHHHHHHHHHHHHHHHSTT -- S TT HHHHHHHHHHHHHHH ----- HHHHHHHHHHHH: ExpBur :ebeeeeebbeeebeebeeeeeebeebeebebeebbbebbeebbeebeeebeebe--eeeeebebeeeebbebbebbbeebee-----eeeeeeeeebbeb: Contact : bbb queryA 541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640 :****************************************************************************************************: 4on9_A_1 328:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 427 SecStr :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHH GGG HHHHHHHHHHHHHHHH TT EEEE S HHHH: ExpBur :bbebbeebbbbbbbbebbbbebbbeebeebbeebeeeeeeeebeebbeebeeeeeebeebeeeeebebebbeebbebbeebbeeeeebebbbbbebebbb: Contact : b queryA 641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740 :********************* ****************************************** ******: 4on9_A_1 428:DALKNWIEGNPKLSFLKPGILXXXXXXXXXXXXXXXXXXXXXXXFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQXXXXXXXXGSKCFL: 527 SecStr :HHHHHHHHH GGGTT EEE ----------------------- S SS SEEEE SSS EEEESSEEEEES SS EEEE -------- EEEE: ExpBur :ebbeebbeebeebeebebbee-----------------------eeeeeeebbbbbeeeeeeeeeebebebbbbbbbeebeeebee--------ebbbbe: queryA 741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRD: 792 :****************************************************: 4on9_A_1 528:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRD: 579 SecStr :EES HHHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHH : ExpBur :bbeeeeebeeeeeeeeeeebbeebbeebeeeeeeebeeebeebbeeeeeeee: |