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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
FOCUSED SITES | template(5hdh_A auth_asym_id:A) | ||||||
SiteNum | AA | label_ seq_id |
auth_ seq_id |
AA | Sec | Exp/Bur | RelAcc |
823 | V | 797 | 823 | V | e | 120.7 |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [751 aa] | Toll-like receptor 8 :TLR8_HUMAN |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5hdh_A_1 identity=94.9% |
queryA 33:SYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLL: 132 :******************************************************************** ********************: 5hdh_A_1 7:SYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELLL: 106 SecStr : SSEEEE SSSEEEE SS SS S SS SEEE SS EE TTTS S S EEE S S ------------ EE TTTTTT SS EEE : ExpBur :eebbeeeeeeeeeebebbebebeebbeeeeeebeebebbebebeebeeebbeebeebbbbebbebeee------------ebebeebbbeebeebeebbb: queryA 133:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 232 :****************************************************************************************************: 5hdh_A_1 107:EDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNT: 206 SecStr : SS SS SS S SEEE SS EE TTTTTT S SEEE SSS S SS S EE TTTTTT TT EEE SS SS SS TT SEEE SS: ExpBur :bebebeebbeebbebbebbbbbebbbeebeeebbbebeebeebebbebbbbeeebeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbb: queryA 233:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 332 :****************************************************************************************************: 5hdh_A_1 207:QIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGAF: 306 SecStr : EE TTTTTT TT EEE TTSS S TT GGG EE TTTTTT TT EEE SS S GGGGTT TT EEE SS HHHHHH GG: ExpBur :ebeebeeebbeebeebbbbbbbbbbbbbeeeeeeeeebeeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebeebebbbbbbbbbbebbeebeb: queryA 333:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 432 :****************************************************************************************************: 5hdh_A_1 307:LTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISP: 406 SecStr :GGG TT EEE S TTB SB GGGGG TT EEE TT SEE GGGGGGGTT TT EEE S EE GGGGGG SS EEE S : ExpBur :beebeebbebbbbbbbeeeebeeebebbeebbebeebebbbbbbbbbbebeeebbebbbebeebebbbbbbbebeebebebbeebeebebbbbbebebeb: queryA 433:LVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 532 :** ********* **********************************************************************: 5hdh_A_1 407:LVXXXXXXXXNSSSFQRHIXXXXXXXXXXXPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHV: 506 SecStr : -------- B ----------- SSS S SS HHHHTTS EEE SS SS TTTTTT SEEE SS S TTTTSTT : ExpBur :ee--------eeeeebeee-----------eeeeebbeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbbbebebebebebbeebeeb: queryA 533:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 632 :****************************************************************************************************: 5hdh_A_1 507:KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYI: 606 SecStr :SEEE SS TTTTTT TT EEE S HHHHSTT GGGGG SS EEE TTS SS EESS EEE TTS HHHHHHSSSSTTT: ExpBur :ebbbbbebebbbeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebbbeebbeeeebebebbeebbbbbbbbbebbeeeeeebb: queryA 633:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 732 :****************************************************************************************************: 5hdh_A_1 607:SIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFL: 706 SecStr :TTTTEETT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S GGGT SS EEE SS S : ExpBur :ebbeebeebeebebbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebebbbbebbebeebbeebeebbebbebbbbbebebeebbebbe: queryA 733:SEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELTTCV: 823 : ********************* *************************************************************: 5hdh_A_1 707:XXXSSLKHLDLSSNLLKTINKSALXXXXXXKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLELTTCV: 797 SecStr :--- EEE SS S ------ SEEE TT EE STTHHHHHHHHHH TTSB S TTT BEEESTTTTT BTTT GGGG : ExpBur :---eebeebbbbebebebbeeeee------eeeebbbbebebebeeebeebeebbeeeeebebeeebebebeeeeebeeebbbebeeeeee: |