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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(AMPN_HUMAN) | O 1 (O) | polymer(polypeptide(L)) [861 aa] | Endoplasmic reticulum aminopeptidase 1 :ERAP1_HUMAN | |
2 | b | YA 1 (y) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 90R(H) 91P(A) 92Y(N) 240P(E) 262P(L) (identity: 0.0 %/36.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6m8p_O_1 identity=36.5% |
queryA 71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNY---TLSQGHRVVL--RGVGGSQPPDIDKTELVEPTEYLVVH: 165 :** *** * * ** * * * * * ** ** * ** * * * * * * * * : 6m8p_O_1 33:WNKIRLPEYVIPVHYDLLIHANLTT-----LTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGXXXXLSEEPLQVLEHPRQEQIALLAP-EPLLVG: 126 SecStr : SS TTEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS SEEEEE S EEEEEEEEE ---- EEEE EEEEETTTTEEEEE S-S TT: ExpBur :beeeebbebbebebbbbebebbbee-----eebebebebebebeeebebbbbbbbebeeeebbbebe----eeeeebeeeebeebbbbbbebe-eebeee: Contact : bbb queryA 166:LKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYM--EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPN: 263 :* * * * *** * * ** * * ** ** ******** ** * * * *** * * * : 6m8p_O_1 127:LPYTVV--------IHYAGNLSETFHGFYKSTYRTKEGELR-ILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNM-PLVKSVTVAEGLI: 216 SecStr : EEEEE--------EEEEE BSSSSEEEEEEEE TTS EE-EEEEEE TTTTGGGTS B STTS BEEEEEEEE TT EEEESS- EEEEE TTT E: ExpBur :eebbbb--------bebebebbebbbbbbbbbbebeeeeee-ebbbbbbbbbbbbbbbbbbbbbebbbbbbbebebeeebebbbbb-eeeeeeebeeebb: Contact : b b queryA 264:WNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYR: 363 : * * ****** *** * * * * ** * * * **** * * ****** * *** ******** ***: 6m8p_O_1 217:ED--HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKI--NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYR: 312 SecStr :EE--EEEE SB GGG EEEE EEEEEE TT EEEEEE GGGG--GG HHHHHHHHHHHHHHHHHHT SSEEEEEEESS SSSEE TTEEEEE: ExpBur :bb--ebeebeebbbbbbbbbbbebeeeeeebeeebebbbbbbeebb--ebbebbbebbbebbebbbebbebebebebbbbbbbbbbbeebbbbbbbbbbb: queryA 364:ENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEIN: 463 :* **** ** * * ************** ************* * * * * **** **** *** : 6m8p_O_1 313:ESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-FGKCFDAMEVDALNSSHPVSTP---VE: 408 SecStr :HHHH TTT HHHHHHHHHHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH TTT TTTTT-THHHHHHHHHHTSTT SS --- : ExpBur :bebbbeeeebbbbebebebbbebbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeebbeebebeeeb-bbebbebbebbbbebbbebbbe---be: queryA 464:TPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGT---: 560 : **** * ** ** *** * ** ** * ** * ** * ** *** * ** **** *** ** * * : 6m8p_O_1 409:NPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMA-SIGGGGVD----VKTMMNTWTLQKGFPLITI-TVRGRNVH: 502 SecStr :SHHHHHHTSSHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTEEE HHHHHHHHH-TT SS ----HHHHHHHHHSS S EEEEE-EEETTEEE: ExpBur :ebeebbbbbbebbebbbbbbbbbbbeebeeeebeebbbebbeebeeeebebeebbebbe-eebeeeee----beebbebbbebbbbbbbbb-eeeeeebe: queryA 561:LSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQ: 660 : *** * * ** * * * * ** * *** * * * * * * ** : 6m8p_O_1 503:MKQEHYM----KGXXXXXDTGYLWHVPLTFITSKSDMVHRFLLKTKT-DVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRAS: 597 SecStr :EEEEE ---- ----- EEEEEEETTEEEEEEEEE SSE-EEEE SS S EEESGGG SSSEEEE TTHHHHHHHHHHHHGGGS HHHHHH: ExpBur :bebebbe----ee-----eeeeebebbbbbbbeeeeeeeeeebeeee-eebebeeebebbbbbbbbebbbbbbbeeeebeebbebbeeebeebeebbbbb: queryA 661:IINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSL-SYFKLM--FDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIPENLMDQYSEVNAI: 757 : ** ** * * * ** * * * ** * * *** * ** * * * * : 6m8p_O_1 598:LINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLI-----DKQTWTD-EGSVSERMLRSQLL: 691 SecStr :HHHHHHHHHTTTSS HHHHHHHHGGGGG HHHHHHHHHHHHHHHHHHHTSS HHHHHHHHHHHHHHHHHHH-----HH SSS- S HHHHHHHHHHH: ExpBur :bbbbbbbbbeeeebebeebbebbebbbebeebbbbebbbebbbebbbbbbbeebeebbeebeebbbebbeebb-----eebebee-eeebbeebbbbebb: queryA 758:STACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQ: 857 : ** * * * * * * * * * *** * ** * * * * *: 6m8p_O_1 692:LLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQ: 789 SecStr :HHHHHTT HHHHHHHHHHHHHHHHTTT S HHHHHHHH--HHHTTSHHHHHHHHHHHHH HHHHHHHHHHHHT HHHHHHHHHHHHHTSSS GG: ExpBur :bbbbbbebeebbeebebebeebeeeeeeeebebbbbbbbb--bbbbeeeebbebbbeebeebebbbeeebbbebbbbbeeeebbeebbebbeeeeebebb: queryA 858:DATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEV: 957 : * * * * * * ** ** ** * * *** * * * ** * * * ** * * : 6m8p_O_1 790:EFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKEN--GSQLRCVQQTIETIEENIGWMDKNFDK: 887 SecStr :GHHHHHHHHHHSTTTHHHHHHHHHHTHHHHHHHH TT HHHHHHHHHHHTT SHHHHHHHHHHHHHTTTT--TTT HHHHHHHHHHHHHHHHHHHHHHH: ExpBur :bbbebbbbbbebeebbebbbebbeeebeebbeebbbbbebbeebbbbbbebbbeeeebeebeebbeebeee--beebebbebbbbbbebbbebbeebbee: queryA 958:VLQWF: 962 : * : 6m8p_O_1 888:IRVWL: 892 SecStr :HHHHH: ExpBur :beebb: |