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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(AMPN_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [860 aa] | Leucyl-cystinyl aminopeptidase :LCAP_HUMAN | |
2 | b | D 1 (D) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 244T 289Y(N) 303W(Y) (identity: 33.3 %/36.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4p8q_A_1 identity=36.4% |
queryA 71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGSL: 170 :* *** * * * * ** * ** * * ** ** * ** ** * * *: 4p8q_A_1 10:WAQIRLPTAVVPLRYELSLHPNLTS-----MTFRGSVTISVQALQVTWNIILHSTGHNIS-----RVTFMSAVSSQEKQAEILEYAYHGQIAIVAPE-AL: 98 SecStr : SSS SSEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS EEEEEEE S EEE-----EEEE TT S EE EEEEETTTTEEEEEEEE-EE: ExpBur :eeeeebeebbebebbebebebebee-----eebebebebebebeeeeeebbbbbeebeee-----ebbbbeeeeeeeeebeebeeeebbbbbbebee-eb: queryA 171:VKDSQYEMDSEFEGELADDLAGFYRSEYM-EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEF: 269 : * * *** * * * * * ** ** ******** ** * * * ****** ** * * * **: 4p8q_A_1 99:LAGHNYTLKIEYSANISSSYYGFYGFSYTDESNEKKYFAATQFEPLAARSAFPCFDEPAFKATFIIKIIRDEQYTALSNM-PKKSSVVL--DDGLVQDEF: 195 SecStr : TT EEEEEEEEEEE BSSSSEEEEEEEE TTS EEEEEEEE TTTTHHHHS B SSSSEEEEEEEEEEETTSEEEESS- EEEEEE --TTSEEEEEE: ExpBur :eeeeebebbbebebebeeebebbbbbebebeeeeebebbbbbbbbbbbbebbbbbbbbebbbbbbbebbbeeebebbbbb-eeeeeeee--eeebbbbeb: Contact : b queryA 270:HTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLF: 369 : ****** **** * * ** * * * * * * *** * * ** *** * * *** ********* * ** ** : 4p8q_A_1 196:SESVKMSTYLVAFIVGEMKNL-SQDVNGTLVSIYAVPEKIGQVH--YALETTVKLLEFFQNYFEIQYPLKKLDLVAIPDFEAGAMENWGLLTFREETLLY: 292 SecStr : SEEGGG EEEE EEE-EEEETTEEEEEEE GGGSGGGH--HHHHHHHHHHHHHHHHHTS SSSEEEEEEES SS TTEEEEEHHHH : ExpBur :eebeebbbbbbbbbbbbbeee-eeebeebebbbbbbeeebeebe--bbbebbbebbebbbebbebebebebbbbbbbbbeebbebbbbbbbbbebebbeb: Contact : b b queryA 370:DPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDV----YRVMAVDALASSHPLSTPASEINTP: 465 :* ** * *************** ************ ** * * * * * * **** * * : 4p8q_A_1 293:DSNTSSMADRKLVTKIIAHELAHQWFGNLVTMKWWNDLWLNEGFATFMEYFSLEKI-----FKELSSYEDFLDARFKTMKKDSLNSSHPIS---SSVQSS: 384 SecStr : TTT HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHT----- GGG THHHHHHHHHHHHHHHTSTT S --- SH: ExpBur :eeeebbbeeebebbbbbbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeee-----beebbbebebbebbbebbeebbbeebebbe---eebeee: queryA 466:AQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTL--SQ: 563 : ** * ** ** ** * * ** ****** *** * *** * * * * **** *** ** * *: 4p8q_A_1 385:EQIEEMFDSLSYFKGSSLLLMLKTYLSEDVFQHAVVLYLHNHSYASIQSDDLWDSFNEVXNQ-----TLDVKRMMKTWTLQKGFPLVTVQKKGKELFIQQ: 479 SecStr :HHHHHT HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHTTTEEE THHHHHHHT - -----SSS TTSHHHHHSSSS EEEEEEEETTEEEEEE: ExpBur :eebeebeeebbbbbbbbbbbbbbeebeeeebeebbbebbeebeeeebebeebbebbbeb-ee-----eeeebebbebbbebbbbbbbbbeeeeeebebeb: queryA 564:EHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDV--RAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQI: 661 :* * * * * * * ** * * ** * * *** * * * ** ** : 4p8q_A_1 480:ERFFLNM-XXXXXXSDTSYLWHIPLSYVTEGRNYSKYQSVSLLDKKSGVINLTEEVLWVKVNINMNGYYIVHYADDDWEALIHQLKINPYVLSDKDRANL: 578 SecStr :EE ------- S EE EEEE TTS EEE EE SSEEEEE SS SEEEESGGG SSSEEEE HHHHHHHHHHHHH GGGS HHHHHHH: ExpBur :ebbebee-------eeeeeebbbbbbbbbbbeeeeeeeeeeebeeeeeebebeeebebbbbbbebebbbbbbbeeebbeebbebbeeebeebebebbbbb: queryA 662:INDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNN----------TNNWREIPENLMDQY: 751 :** * ** *** * * * * ** * * * * ** * * * ** * : 4p8q_A_1 579:INNIFELAGLGKVPLKRAFDLINYLGNENHTAPITEALFQTD---LIYNLLEKLGYM-DLASRLVTRVFKLLQNQIQQQTWTDEGTPSMRELRSALLE--: 672 SecStr :HHHHHHHHHHTSS HHHHHHHGGGGGG HHHHHHHHHHHH---HHHHHHHHTT H-HHHHHHHHHHHHHHHHHHHT SSS S HHHHHHHHHHHH--: ExpBur :bbbbbbbbebeebebebbbebbebbeebeebbbbebbbebbe---ebbbbbbbbeee-ebbeebbebbbebbeebbeebebeeeeebbebebbeebbe--: queryA 752:SEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNP: 851 : ** * ** ** ** * * * * *** * * ** : 4p8q_A_1 673:-------FACTHNLGNCSTTAMKLFDDWMASNGTQSLPTDVMTTVF--KVGAKTDKGWSFLLGKYISIGSEAEKNKILEALASSEDVRKLYWLMKSSLNG: 763 SecStr :-------HHHHTT SSHHHHHHHHHHHHHHTTT S HHHHHHHH--HHHTTSHHHHHHHHHHHHH HHHHHHHHHHHHH HHHHHHHHHHHHHT: ExpBur :-------bbbebebeebbeebeeebeebbeeeeeeebebbbbbbbb--bbbbeeeebbeebbebbeeeeebeebebbbbbbbbbeeeebbeebbebbbee: queryA 852:DLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWV: 951 :* * * * * * **** ** ** ** * * *** * * * * * *** ** * : 4p8q_A_1 764:DNFRTQKLSFIIRTVGRHFPGHLLAWDFVKENWNKLVQKFPLGSYTIQNIVAGSTYLFSTKTHLSEVQAFFENQSEATF--RLRCVQEALEVIQLNIQWM: 861 SecStr :SSS GGGHHHHHHHHHHSGGGHHHHHHHHHHTHHHHHHHS TTSHHHHHHHHHHHTT SHHHHHHHHHHHHHH TTTT--TSHHHHHHHHHHHHHHHHH: ExpBur :eebeeebbbbbbebbbebeebbeebbebbeeebeebeeebeeebeebeebbebbbebbbeeeebeebeebbeeeeeebb--ebebbeebbbebebbbebb: queryA 952:KENKEVVLQWF: 962 : * * : 4p8q_A_1 862:EKNLKSLTWWL: 872 SecStr :HHHTTGGGG : ExpBur :eebbeebeebe: |