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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(AMPN_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [858 aa] | ENDOPLASMIC RETICULUM AMINOPEPTIDASE 1 :ERAP1_HUMAN | |
2 | b | D 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 450A(N) (identity: 0.0 %/36.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:2yd0_A_1 identity=36.6% |
queryA 71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNY---TLSQGHRVVL--RGVGGSQPPDIDKTELVEPTEYLVVH: 165 :** *** * * ** * * * * * ** ** * ** * * * * * * * * : 2yd0_A_1 4:WNKIRLPEYVIPVHYDLLIHANLTT-----LTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGXXXXLSEEPLQVLEHPRQEQIALLAP-EPLLVG: 97 SecStr : SS SSEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS EEEEEEE SS EEEEEEEEE ---- EEEE EEEEETTTTEEEEEEE-EEE TT: ExpBur :eeeeebbeebebebbebbbebebee-----eebebbbebebebeeebeebbbbbeebebeebbbeee----eeeeebeeeeeeebbbbbbebe-eebeee: queryA 166:LKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYM--EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNM-LPKGPSTP--LPE: 260 :* * * * *** * * ** * * ** ** ******** ** * * * *** * * * *: 2yd0_A_1 98:LPYTVV--------IHYAGNLSETFHGFYKSTYRTKEGELR-ILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIE: 188 SecStr : EEEE--------EEEEEE BSSSSEEEEEEEE TTS EE-EEEEEE TTTTHHHHS B STTS BEEEEEEEE TT EEEESS EEEEEEEETTEEE: ExpBur :eebbbb--------bebebebbebbbbbbebebebeeeeee-ebbbbbbbbbbbbbbbbbbbbbebbbbbbbbbebeeebebbbbbeeeeeeeeeeebbb: queryA 261:DPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLV: 360 :* * * ****** *** * * * * ** * * * **** * * ****** * *** ******** : 2yd0_A_1 189:D------HFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKI--NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLT: 280 SecStr :E------EE SB GGG EEEE EEEEEE TTS EEEEEE TTTG--GG HHHHHHHHHHHHHHHHHTT SSEEEEEEESS SSSEE TTEE: ExpBur :b------ebeebeebbbbbbbbbbbebeeeeeebeeebebbbbbbebbb--ebbebbbebbbebbebbbebbebebebebbbbbbbbbbbeebbbbbbbb: queryA 361:TYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPAS: 460 :**** **** ** * * ************** ************* * * * * **** **** *** : 2yd0_A_1 281:TYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYF-FGKCFDAMEVDALNSSHPVSTP--: 377 SecStr :EEEGGGT TTT HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH GGG GGGGH-HHHHHHHHHHHTSTT SS --: ExpBur :bbbbebbbeeeebbebebebebbbebbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeebbeebebeebb-beebbebbebbbbebbbebbbe--: Contact : b queryA 461:EINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTT--------------------VRDIM: 540 : **** * ** ** *** * ** ** * ** * ** * ** *** * *: 2yd0_A_1 378:-VENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASIXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDVKTMM: 476 SecStr :- SHHHHHHTSSHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTEEE HHHHHHHHHT ---------------------------- HHHHH: ExpBur :-beebeebbbbbeebbebbbbbbbbbbeeebeeeebeebbbebbeebeeeebebeebbebbeee----------------------------eeebeebb: queryA 541:NRWTLQMGFPVITVDTSTGT---LSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEE: 637 :* **** *** ** * * *** * * ** * * * * ** * *** * * : 2yd0_A_1 477:NTWTLQKGFPLITI-TVRGRNVHMKQEHYM----KGXXXXXDTGYLWHVPLTFITSKSDMVHRFLLKTKT-DVLILPEEVEWIKFNVGMNGYYIVHYEDD: 570 SecStr :HHHHSS SEEEEEE-EEETTEEEEEEEEE ---- ----- EEEEEEESS S EEEEE SSE-EEEE SS S EEESGGG SS EEEE TT: ExpBur :ebbbebbbbbbbbb-beeeeebebebebbe----ee-----eeeeebbbbbbbbbeeeeeeeeeebeeee-eebebeeeeebbbbbbebebbbbbbbeee: queryA 638:NWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSL-SYFKLM--FDRSEVYGPMKNYLKKQVTPLFIHFR: 734 : * * * * ** ** ** * * * ** * * * ** * * *** * ** * * * : 2yd0_A_1 571:GWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLI----: 666 SecStr :HHHHHHHHHHH GGGS HHHHHHHHHHHHHHHTTTSS HHHHHHHHGGGGG HHHHHHHHHHHHHHHHHHHTSS HHHHHHHHHHHHHHHHHHH----: ExpBur :ebeebbebbeeebeebeebbbbbbbbbbbbbbbeeebebeebbebbebbeebeebbbbebbbebbbebbbbbbbeebeebbeebbebbbebbeebb----: queryA 735:NNTNNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALAC: 834 : * ** * * * * * * * * * *** * ** : 2yd0_A_1 667:-DKQTWTD-EGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCR: 762 SecStr :-HT SS - S HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHHTTT S GGGHHHHH--HHHTTSHHHHHHHHHHHTT HHHHHHHHHHHTT: ExpBur :-eebebee-eeebbebbbbbebbbbbbebebeebbeebebebeebeeeeeeeebebbbbbbbb--bbbbeeeebbebbbeebeebebbbeeebbbebbbb: queryA 835:SKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGT: 934 : * * * * * * * * * * * ** ** ** * * *** * * * ** : 2yd0_A_1 763:TQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKEN--GSQL: 860 SecStr : HHHHHHHHHHHHH SSS GGGHHHHHHHHHTSTTTHHHHHHHHHHTHHHHHHHH TT HHHHHHHHHHHTT SHHHHHHHHHHHHHTGGG--TTT : ExpBur :beeeebbeebbebbeebeebbbbbbbebbebbbebeebbebbbebbeeebeebbeebbbbbebbeebbbebbebbbeeeebeebeebbeebeee--beeb: queryA 935:RALEQALEKTKANIKWVKENKEVVLQWF: 962 :* * * ** * * * : 2yd0_A_1 861:RCVQQTIETIEENIGWMDKNFDKIRVWL: 888 SecStr :HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbebbbbbbebbbebbeebeeebeebb: |